Parental gene:

ENSCAFG00000007340

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:20:32185535..32191199(+)


>ENSCAFG00000007340
ATGGCGGCGGTGTCTGGCCTGATGCGGAGACCCCTGGAACAGGTGTCGGGGTTGCTGAGGAGGCGCTTCCACCGGACGGC
GCCGGCGGCGCTGCAGGTGACAGTTCGTGAGGCTATAAACCAAGGTATGGATGAAGAGCTGGAAAGAGATGAGAAGGTAT
TTCTCCTTGGGGAAGAAGTTGCCCAGTATGATGGTGCATATAAGGTTAGTCGAGGCCTGTGGAAGAAATATGGCGATAAG
AGAATCATAGATACTCCCATATCTGAGATGGGCTTTGCTGGAATTGCTGTGGGTGCAGCTATGGCTGGGTTGAGGCCCAT
CTGTGAATTTATGACCTTCAATTTCTCTATGCAAGCCATTGACCAAGTTATAAATTCAGCTGCCAAGACCTACTACATGT
CGGGGGGCCTTCAGCCTGTGCCTATAGTCTTCAGGGGGCCCAATGGTGCCTCAGCAGGTGTGGCTGCCCAACACTCACAG
TGCTTTGCTGCCTGGTATGGGCACTGCCCAGGCTTAAAGGTGGTCAGCCCCTGGAATTCAGAGGATGCAAAAGGACTTAT
TAAATCAGCCATTCGGGATAATAATCCAGTGGTGGTGCTAGAGAACGAACTGATGTATGGAGTTCCTTTTGAATTTCCCT
CCGAAGCTCAGTCAAAAGATTTTCTGATTCCCATTGGAAAAGCCAAAATAGAAAGGCAAGGTACACACATAACTGTAGTT
GCTCATTCAAGACCTGTGGGCCACTGCTTAGAAGCTGCAACAGTGTTATCCAAAGAGGGTATTGAATGTGAGGTGATAAA
TATGCGAACCATCAGACCAATGGACATTGAAACAATAGAAGCCAGTGTCATGAAGACCAATCATCTCATAACTGTGGAAG
GAGGCTGGCCACAGTTTGGAGTAGGAGCTGAAATTTGTGCCAGGATTATGGAAGGCCCTGCATTCAATTTCCTGGATGCT
CCTGCAGTTCGTGTCACTGGTGCTGATGTCCCTATGCCTTATGCAAAGATTCTAGAAGACAACTCTGTACCTCAAGTTAA
AGACATCATATTTGCAATAAAGAAAACATTAAATATCTAG

Library Parental gene expression (RPM)
SRP012049_cerebellum 45 .69 RPM
SRP017611_brain 34 .06 RPM
SRP017611_kidney 113 .45 RPM
SRP017611_liver 14 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000021724 ortholog_one2many 1 retrogene
retro_btau_596,
Callithrix jacchus ENSCJAG00000019739 ortholog_one2many 1 retrogene
retro_cjac_3875,
Dasypus novemcinctus ENSDNOG00000006937 ortholog_one2many 1 retrogene
retro_dnov_1090,
Monodelphis domestica ENSMODG00000002398 ortholog_one2many 1 retrogene
retro_mdom_614,
Mus musculus ENSMUSG00000021748 ortholog_one2many 1 retrogene
retro_mmus_290,
Oryctolagus cuniculus ENSOCUG00000015632 ortholog_many2many 1 retrogene
retro_ocun_342,
Procavia capensis ENSPCAG00000016595 ortholog_one2many 1 retrogene
retro_pcap_261,
Sarcophilus harrisii ENSSHAG00000008480 ortholog_many2many 1 retrogene
retro_shar_5,
Ictidomys tridecemlineatus ENSSTOG00000019553 ortholog_one2many 2 retrogenes
retro_itri_1349, retro_itri_249,
Tupaia belangeri ENSTBEG00000016148 ortholog_one2many 2 retrogenes
retro_tbel_1651, retro_tbel_3170,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1215 87.68 98.33
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2. retro_cfam_2031 96.94 100.00
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Download FASTA sequences of all ENSCAFG00000007340 retrocopies