Parental gene:

SHFM1, ENSCAFG00000002179

Aliases:None
Description:split hand/foot malformation (ectrodactyly) type 1 [Source:HGNC Symbol;Acc:10845]
Organism:Dog (Canis familiaris)
Coordinates:14:21766208..21796756(-)


>ENSCAFG00000002179
ATGCTCCTCTTCAAAGCCATTCTTGTTCCCATAGAAACCAATGTGAGATCCTGGAAAACAAGGCTTTTGGCGCGGAGCGT
CGCCATGTCAGAGAAGAAGCAGCCGGTAGATTTGGGTCTCCTGGAGGAAGACGACGAGTTCGAGGAGTTCCCTGCCGAAG
ACTGGGCTGGTTTAGATGAAGATGAAGATGCACATGTCTGGGAGGATAATTGGGATGATGACAATGTAGAGGATGACTTC
TCCAATCAGTTACGAGCTGAACTAGAGAAACATGGTTATAAGATGGAGACCTCATAG

Library Parental gene expression (RPM)
SRP012049_cerebellum 33 .64 RPM
SRP017611_brain 12 .23 RPM
SRP017611_kidney 68 .48 RPM
SRP017611_liver 12 .40 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000010402 ortholog_one2one 1 retrogene
retro_cpor_446,
Echinops telfairi ENSETEG00000019778 ortholog_one2one 1 retrogene
retro_etel_961,
Felis catus ENSFCAG00000023254 possible_ortholog 2 retrogenes
retro_fcat_1138, retro_fcat_121,
Myotis lucifugus ENSMLUG00000014208 ortholog_one2one 1 retrogene
retro_mluc_948,
Oryctolagus cuniculus ENSOCUG00000026246 possible_ortholog 3 retrogenes
retro_ocun_1324, retro_ocun_452, retro_ocun_77,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_1174 93.24 75.51
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Download FASTA sequences of all ENSCAFG00000002179 retrocopies