Parental gene:

RPS18, ENSCAFG00000000950

Aliases:None
Description:Canis lupus familiaris ribosomal protein S18 (RPS18), mRNA. [Source:RefSeq mRNA;Acc:NM_001048082]
Organism:Dog (Canis familiaris)
Coordinates:12:2712957..2718657(+)


>ENSCAFG00000000950
ATGTCTCTAGTGATCCCTGAGAAGTTCCAGCACATTTTGCGAGTACTTAACACCAATATCGATGGGCGGCGGAAAATAGC
CTTTGCCATCACAGCAATTAAGGGTGTGGGGCGAAGATATGCTCATGTGGTATTGAGGAAAGCAGACATCGATCTCACCA
AGAGAGCAGGAGAGCTCACTGAGGATGAGGTGGAACGTGTGATCACTATTATGCAGAATCCACGCCAGTATAAGATCCCT
GACTGGTTTTTGAACAGACAAAAGGATGTAAAGGATGGAAAGTACAGCCAGGTCCTGGCCAATGGTCTGGACAACAAACT
TCGTGAAGACCTGGAGAGACTGAAGAAGATTCGAGCCCACAGGGGGCTGCGCCACTTTTGGGGACTTCGTGTCCGAGGCC
AGCACACCAAGACCACAGGGCGCCGTGGTCGCACCGTGGGTGTGTCCAAGAAGAAATAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 228 .26 RPM
SRP017611_brain 90 .43 RPM
SRP017611_kidney 675 .30 RPM
SRP017611_liver 191 .73 RPM



Species Parental gene accession Homology type Retrogenes number
Dipodomys ordii ENSDORG00000013825 ortholog_one2one 6 retrogenes
retro_dord_185, retro_dord_326, retro_dord_426, retro_dord_481, retro_dord_50, retro_dord_772,
Gorilla gorilla ENSGGOG00000006571 possible_ortholog 5 retrogenes
retro_ggor_1496, retro_ggor_2310, retro_ggor_344, retro_ggor_77, retro_ggor_93,
Loxodonta africana ENSLAFG00000032173 possible_ortholog 1 retrogene
retro_lafr_1171,
Macaca mulatta ENSMMUG00000003867 possible_ortholog 1 retrogene
retro_mmul_2198,
Mus musculus ENSMUSG00000008668 ortholog_one2one 2 retrogenes
retro_mmus_57, retro_mmus_66,
Nomascus leucogenys ENSNLEG00000006840 ortholog_one2one 10 retrogenes
retro_nleu_1074, retro_nleu_1161, retro_nleu_1176, retro_nleu_1466, retro_nleu_219, retro_nleu_2572, retro_nleu_2616, retro_nleu_525, retro_nleu_60, retro_nleu_737,
Oryctolagus cuniculus ENSOCUG00000010546 possible_ortholog 1 retrogene
retro_ocun_31,
Procavia capensis ENSPCAG00000005854 ortholog_one2one 2 retrogenes
retro_pcap_235, retro_pcap_319,
Pongo abelii ENSPPYG00000025953 possible_ortholog 14 retrogenes
retro_pabe_1138, retro_pabe_128, retro_pabe_1481, retro_pabe_1482, retro_pabe_1813, retro_pabe_1881, retro_pabe_2303, retro_pabe_2407, retro_pabe_2663, retro_pabe_2833, retro_pabe_2967, retro_pabe_3013, retro_pabe_3070, retro_pabe_368,
Pan troglodytes ENSPTRG00000018039 possible_ortholog 1 retrogene
retro_ptro_121,
Rattus norvegicus ENSRNOG00000028505 ortholog_one2one 4 retrogenes
retro_rnor_102, retro_rnor_234, retro_rnor_29, retro_rnor_70,
Sarcophilus harrisii ENSSHAG00000006857 ortholog_one2one 2 retrogenes
retro_shar_265, retro_shar_563,
Sarcophilus harrisii ENSSHAG00000008658 possible_ortholog 1 retrogene
retro_shar_618,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_414 65.93 59.21
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2. retro_cfam_522 62.39 70.39
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3. retro_cfam_789 62.07 55.92
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4. retro_cfam_856 61.86 75.66
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5. retro_cfam_1311 86.18 100.00
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6. retro_cfam_1607 76.47 100.00
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7. retro_cfam_2132 73.33 68.42
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Download FASTA sequences of all ENSCAFG00000000950 retrocopies