Parental gene:

BT.53925, ENSBTAG00000031800

Aliases:PPDPF, C13H20orf149, C20orf149
Description:Pancreatic progenitor cell differentiation and proliferation factor [Source:UniProtKB/Swiss-Prot;Acc:Q3ZCB6]
Organism:Cow (Bos taurus)
Coordinates:13:54608179..54609543(-)


>ENSBTAG00000031800
ATGGCAGCCATCCCCTCCAGCGGCTCGCTCGTGGCCACCCACGACTACTACCGGCGCCGCCTGGGCTCCACTTCCAGTAA
CAGCTCCTGCGGAAGTGCCGAGTACCCCGGGGAAGCCATCCCCCACCACCCGGGTCTCCCCAAAGCAGACCCGGGACACT
GGTGGGCTAGCTTCTTCTTCGGGAAGTCCACTCTCCCGTTCATGGCCACAGTGCTGGAGTCCCCAGAGCACTCGGAGTCT
GCCCAGGCCTCCACCAGCACGATCACATGTGACCTGGCTCAGAAAGCTGTGGGGAAGCAGCAGCCCAGCGGCCAGCCTGG
CAAAACCGCAGGCCCCCGTCCTGAGTGA

Library Parental gene expression (RPM)
ERP005899_liver 19 .61 RPM
ERP005899_muscle 114 .87 RPM
SRP017611_brain 37 .96 RPM
SRP017611_kidney 84 .52 RPM
SRP017611_liver 32 .24 RPM
SRP030211_testis 54 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Equus caballus ENSECAG00000009413 ortholog_one2many 1 retrogene
retro_ecab_477,
Felis catus ENSFCAG00000024386 ortholog_many2many 14 retrogenes
retro_fcat_1018, retro_fcat_1061, retro_fcat_128, retro_fcat_1293, retro_fcat_1581, retro_fcat_1669, retro_fcat_1685, retro_fcat_194, retro_fcat_308, retro_fcat_325, retro_fcat_355, retro_fcat_440, retro_fcat_711, retro_fcat_789,
Homo sapiens ENSG00000125534 ortholog_one2many 1 retrogene
retro_hsap_3205,
Latimeria chalumnae ENSLACG00000002835 ortholog_one2many 1 retrogene
retro_lcha_69,
Loxodonta africana ENSLAFG00000026496 ortholog_many2many 2 retrogenes
retro_lafr_1082, retro_lafr_251,
Macaca mulatta ENSMMUG00000006064 ortholog_many2many 2 retrogenes
retro_mmul_2020, retro_mmul_41,
Monodelphis domestica ENSMODG00000016871 ortholog_many2many 2 retrogenes
retro_mdom_1325, retro_mdom_222,
Mustela putorius furo ENSMPUG00000008301 ortholog_one2many 12 retrogenes
retro_mputfur_1039, retro_mputfur_1097, retro_mputfur_1247, retro_mputfur_1282, retro_mputfur_1312, retro_mputfur_1327, retro_mputfur_1355, retro_mputfur_347, retro_mputfur_526, retro_mputfur_665, retro_mputfur_788, retro_mputfur_928,
Mus musculus ENSMUSG00000016344 ortholog_one2many 3 retrogenes
retro_mmus_1224, retro_mmus_658, retro_mmus_815,
Nomascus leucogenys ENSNLEG00000010068 ortholog_one2many 3 retrogenes
retro_nleu_1154, retro_nleu_1270, retro_nleu_1339,
Otolemur garnettii ENSOGAG00000008810 ortholog_one2many 2 retrogenes
retro_ogar_1797, retro_ogar_1912,
Pan troglodytes ENSPTRG00000013739 ortholog_one2many 1 retrogene
retro_ptro_2243,
Rattus norvegicus ENSRNOG00000012722 ortholog_one2many 1 retrogene
retro_rnor_752,
Sarcophilus harrisii ENSSHAG00000018338 ortholog_one2many 3 retrogenes
retro_shar_637, retro_shar_640, retro_shar_733,
Ictidomys tridecemlineatus ENSSTOG00000007808 ortholog_one2many 1 retrogene
retro_itri_1363,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_54 89.81 93.91
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2. retro_btau_385 56.00 63.48
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3. retro_btau_1339 95.45 94.78
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4. retro_btau_1538 85.59 94.78
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5. retro_btau_1606 63.93 52.17
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6. retro_btau_1817 76.36 94.78
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7. retro_btau_1857 60.19 89.57
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Download FASTA sequences of all ENSBTAG00000031800 retrocopies