Parental gene:

PPIA, ENSBTAG00000012003

Aliases:None
Description:Peptidyl-prolyl cis-trans isomerase A [Source:UniProtKB/Swiss-Prot;Acc:P62935]
Organism:Cow (Bos taurus)
Coordinates:4:77409432..77413143(-)


>ENSBTAG00000012003
ATGGTCAACCCCACCGTGTTCTTCGACATCGCTGTCGACGGCGAGCCCTTGGGCCGCGTCTCTTTTGAGCTGTTTGCAGA
CAAAGTTCCAAAGACAGCAGAAAACTTTCGTGCTCTGAGCACTGGAGAGAAAGGATTTGGTTATAAAGGTTCCTGCTTTC
ACAGAATAATTCCGGGATTTATGTGCCAGGGTGGTGACTTCACACGCCATAATGGTACTGGTGGCAAGTCCATCTATGGC
GAGAAATTTGATGATGAGAATTTCATTTTGAAGCATACAGGTCCTGGCATCTTGTCCATGGCAAATGCTGGCCCCAACAC
AAATGGTTCCCAGTTTTTCATTTGCACTGCCAAGACTGAGTGGTTGGATGGCAAGCACGTGGTCTTTGGCAAGGTGAAAG
AGGGCATGAATATTGTGGAAGCCATGGAGCGCTTTGGGTCCAGGAATGGCAAGACCAGCAAGAAGATCACCATTGCTGAC
TGTGGACAAATCTAA

Library Parental gene expression (RPM)
ERP005899_liver 201 .58 RPM
ERP005899_muscle 239 .93 RPM
SRP017611_brain 254 .98 RPM
SRP017611_kidney 275 .02 RPM
SRP017611_liver 137 .12 RPM
SRP030211_testis 219 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000011969 possible_ortholog 54 retrogenes
Cavia porcellus ENSCPOG00000002632 possible_ortholog 11 retrogenes
Echinops telfairi ENSETEG00000002186 possible_ortholog 21 retrogenes
Homo sapiens ENSG00000196262 possible_ortholog 78 retrogenes
Gorilla gorilla ENSGGOG00000026298 possible_ortholog 4 retrogenes
Loxodonta africana ENSLAFG00000011345 possible_ortholog 1 retrogene
Macropus eugenii ENSMEUG00000002016 possible_ortholog 20 retrogenes
Macaca mulatta ENSMMUG00000016638 possible_ortholog 10 retrogenes
Monodelphis domestica ENSMODG00000016089 possible_ortholog 9 retrogenes
Mus musculus ENSMUSG00000071866 possible_ortholog 2 retrogenes
Oryctolagus cuniculus ENSOCUG00000016662 possible_ortholog 3 retrogenes
Otolemur garnettii ENSOGAG00000027997 possible_ortholog 31 retrogenes
Pongo abelii ENSPPYG00000017586 possible_ortholog 12 retrogenes
Pongo abelii ENSPPYG00000017587 possible_ortholog 4 retrogenes
Pan troglodytes ENSPTRG00000023064 possible_ortholog 77 retrogenes
Rattus norvegicus ENSRNOG00000006423 possible_ortholog 2 retrogenes
Sarcophilus harrisii ENSSHAG00000017062 possible_ortholog 3 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000010215 possible_ortholog 10 retrogenes
Tupaia belangeri ENSTBEG00000017484 possible_ortholog 77 retrogenes
Tarsius syrichta ENSTSYG00000008973 possible_ortholog 23 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_155 93.90 100.00
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2. retro_btau_272 68.94 97.56
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3. retro_btau_334 98.78 100.00
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4. retro_btau_335 98.78 100.00
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5. retro_btau_345 62.30 72.56
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6. retro_btau_414 59.23 78.05
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7. retro_btau_751 84.21 69.51
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8. retro_btau_934 59.17 72.56
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9. retro_btau_1005 78.91 77.44
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10. retro_btau_1448 51.09 54.88
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11. retro_btau_1696 76.51 100.00
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12. retro_btau_1806 77.64 97.56
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Download FASTA sequences of all ENSBTAG00000012003 retrocopies