Parental gene:

CCDC58, ENSBTAG00000011138

Aliases:None
Description:Coiled-coil domain-containing protein 58 [Source:UniProtKB/Swiss-Prot;Acc:A4FUI1]
Organism:Cow (Bos taurus)
Coordinates:1:67398384..67457625(-)


>ENSBTAG00000011138
ATGGCGGCGCCCAGTGGCGGTGTGAACTGTGAGGAGTTCGCCGAGTTCCAGGAATTACTCAAGGTGATGAGGACGATTGA
TGACAGAATAGTACATGAATTAAACACTACGGTTCCAACAGCTTCCTTTGCAGGGAAAATTGATGCCAGCCAAACCTGTA
AACAACTTTATGAGTCATTGATGGAGGCCCATGCCAGTAGGGACAGAGTCATAAAAAACTGTATAGCTCAGACCTCATCA
GTAGTAAAACAGCTCCGAGAAGAGAGGGAAAAGAATTTGGATGATTTAACGTTATTAAAGCAACTTAGAAAAGAACAGAC
AAAGTTGAAATGGATGCAGTCAGAACTGAATGTTGAAGAAGTGGTAAATGACAGGAGCTGGAAGGTGTTTAATGAACGCT
GCCGAATTCACTTCAAGCCTCCAAAGAATGAATAA

Library Parental gene expression (RPM)
ERP005899_liver 15 .64 RPM
ERP005899_muscle 9 .55 RPM
SRP017611_brain 1 .92 RPM
SRP017611_kidney 8 .95 RPM
SRP017611_liver 6 .95 RPM
SRP030211_testis 4 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000004505 ortholog_one2one 1 retrogene
retro_chof_1072,
Callithrix jacchus ENSCJAG00000008132 ortholog_one2many 2 retrogenes
retro_cjac_294, retro_cjac_4115,
Dasypus novemcinctus ENSDNOG00000005535 ortholog_one2one 1 retrogene
retro_dnov_743,
Equus caballus ENSECAG00000023743 ortholog_one2one 2 retrogenes
retro_ecab_1088, retro_ecab_458,
Echinops telfairi ENSETEG00000003564 ortholog_one2one 3 retrogenes
retro_etel_1361, retro_etel_228, retro_etel_980,
Homo sapiens ENSG00000160124 ortholog_one2one 3 retrogenes
retro_hsap_1871, retro_hsap_1910, retro_hsap_676,
Gorilla gorilla ENSGGOG00000001964 ortholog_one2many 9 retrogenes
retro_ggor_132, retro_ggor_1369, retro_ggor_1370, retro_ggor_1939, retro_ggor_2951, retro_ggor_2952, retro_ggor_2953, retro_ggor_582, retro_ggor_722,
Loxodonta africana ENSLAFG00000016049 ortholog_one2one 1 retrogene
retro_lafr_227,
Myotis lucifugus ENSMLUG00000000937 ortholog_one2one 2 retrogenes
retro_mluc_2530, retro_mluc_634,
Macaca mulatta ENSMMUG00000011919 ortholog_one2one 4 retrogenes
retro_mmul_1104, retro_mmul_2414, retro_mmul_2531, retro_mmul_723,
Monodelphis domestica ENSMODG00000018298 ortholog_one2one 1 retrogene
retro_mdom_1936,
Mustela putorius furo ENSMPUG00000004777 ortholog_one2one 1 retrogene
retro_mputfur_194,
Mus musculus ENSMUSG00000075229 ortholog_one2one 1 retrogene
retro_mmus_1233,
Nomascus leucogenys ENSNLEG00000000291 ortholog_one2one 6 retrogenes
retro_nleu_1236, retro_nleu_1248, retro_nleu_2697, retro_nleu_390, retro_nleu_435, retro_nleu_683,
Oryctolagus cuniculus ENSOCUG00000002682 ortholog_one2one 2 retrogenes
retro_ocun_724, retro_ocun_839,
Otolemur garnettii ENSOGAG00000003190 ortholog_one2one 2 retrogenes
retro_ogar_2498, retro_ogar_817,
Pongo abelii ENSPPYG00000013486 ortholog_one2one 5 retrogenes
retro_pabe_1551, retro_pabe_3694, retro_pabe_3695, retro_pabe_544, retro_pabe_768,
Pteropus vampyrus ENSPVAG00000012707 ortholog_one2one 2 retrogenes
retro_pvam_1127, retro_pvam_1318,
Rattus norvegicus ENSRNOG00000031653 ortholog_one2one 2 retrogenes
retro_rnor_1013, retro_rnor_1576,
Sorex araneus ENSSARG00000004054 ortholog_one2one 1 retrogene
retro_sara_596,
Sus scrofa ENSSSCG00000025107 ortholog_one2one 2 retrogenes
retro_sscr_1053, retro_sscr_835,
Ictidomys tridecemlineatus ENSSTOG00000004419 ortholog_one2one 1 retrogene
retro_itri_247,
Tupaia belangeri ENSTBEG00000003196 ortholog_one2one 6 retrogenes
retro_tbel_208, retro_tbel_2214, retro_tbel_2781, retro_tbel_2882, retro_tbel_4574, retro_tbel_846,
Tursiops truncatus ENSTTRG00000013399 ortholog_one2one 1 retrogene
retro_ttru_72,
Vicugna pacos ENSVPAG00000002150 ortholog_one2one 1 retrogene
retro_vpac_445,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_328 70.55 100.00
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2. retro_btau_1723 56.25 53.47
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3. retro_btau_1791 56.25 53.47
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4. retro_btau_1815 57.83 56.25
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Download FASTA sequences of all ENSBTAG00000011138 retrocopies