Parental gene:

COPS8, ENSBTAG00000005854

Aliases:None
Description:COP9 signalosome complex subunit 8 [Source:RefSeq peptide;Acc:NP_001076966]
Organism:Cow (Bos taurus)
Coordinates:3:117179568..117192618(+)


>ENSBTAG00000005854
ATGCCAGTGGCGGTGATGGCGGAAAGTTCCTTTAGTTTCAAAAAGTTGCTGGATCAGTGCGAGAACCAGGAGCTCGAGGC
TCCAGGAGGAATTGCTACACCCCCAGTGTATGGTCAGCTTCTAGCTTTGTATCTACTCCATAATGACATGAACAATGCAA
GATATCTTTGGAAAAGAATACCACCTGCTATAAAATCTGCAAACTCGGAACTTGGGGGGATCTGGTCAGTTGGCCAGCGG
ATCTGGCAGAGGGACTTCCCCGGGGTCTACAGCACCATCAACGCCCATCAGTGGTCTGAGGCCGTCCAGCCAATCATGGA
AGCTCTCAGAGATGCAACCCGGAGACGAGCCTTCGCCCTGGTCTCCCAAGCCTATACCTCCATCATCGCCGACGATTTCG
CAGCCTTTGTTGGACTCCCTGTGGAGGAGGCTGTGAAAGGTATCCTCGAGCAAGGCTGGCAAGCCGACTCCACCACAAGG
ATGGTCATGCCCAAGAAGCCAGTTGCAGGGGCCCTGGATGTTTCCTTCAACAGGTTTATTCCCTTATCAGAGCCCGCCCC
TGTTCCACCCATCCCCAACGAGCAGCAGTTAGCCAGACTCACCGATTATGTGGCTTTCCTTGAAAACTGA

Library Parental gene expression (RPM)
ERP005899_liver 28 .19 RPM
ERP005899_muscle 25 .71 RPM
SRP017611_brain 51 .98 RPM
SRP017611_kidney 37 .64 RPM
SRP017611_liver 16 .99 RPM
SRP030211_testis 85 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000030168 ortholog_one2many 1 retrogene
retro_cfam_1327,
Callithrix jacchus ENSCJAG00000002267 ortholog_one2one 1 retrogene
retro_cjac_4193,
Dasypus novemcinctus ENSDNOG00000015309 ortholog_one2many 5 retrogenes
retro_dnov_1157, retro_dnov_1306, retro_dnov_149, retro_dnov_1701, retro_dnov_527,
Felis catus ENSFCAG00000013789 ortholog_one2one 1 retrogene
retro_fcat_1648,
Homo sapiens ENSG00000198612 ortholog_one2one 2 retrogenes
retro_hsap_2657, retro_hsap_4869,
Loxodonta africana ENSLAFG00000008617 ortholog_one2one 1 retrogene
retro_lafr_928,
Macropus eugenii ENSMEUG00000008189 ortholog_one2many 3 retrogenes
retro_meug_583, retro_meug_609, retro_meug_701,
Macaca mulatta ENSMMUG00000021605 ortholog_one2one 1 retrogene
retro_mmul_2610,
Monodelphis domestica ENSMODG00000007474 ortholog_one2one 1 retrogene
retro_mdom_1295,
Mustela putorius furo ENSMPUG00000000068 ortholog_one2many 1 retrogene
retro_mputfur_176,
Mus musculus ENSMUSG00000034432 ortholog_one2one 1 retrogene
retro_mmus_1812,
Nomascus leucogenys ENSNLEG00000010706 ortholog_one2one 2 retrogenes
retro_nleu_1528, retro_nleu_2002,
Oryctolagus cuniculus ENSOCUG00000007341 ortholog_one2one 4 retrogenes
retro_ocun_1549, retro_ocun_1579, retro_ocun_428, retro_ocun_550,
Pongo abelii ENSPPYG00000013308 ortholog_one2many 1 retrogene
retro_pabe_3787,
Rattus norvegicus ENSRNOG00000019635 ortholog_one2one 3 retrogenes
retro_rnor_1005, retro_rnor_1078, retro_rnor_975,
Ictidomys tridecemlineatus ENSSTOG00000022662 ortholog_one2one 4 retrogenes
retro_itri_1065, retro_itri_1383, retro_itri_1737, retro_itri_296,
Tupaia belangeri ENSTBEG00000015944 ortholog_one2one 1 retrogene
retro_tbel_4315,
Tarsius syrichta ENSTSYG00000002196 ortholog_one2one 7 retrogenes
retro_tsyr_1053, retro_tsyr_1559, retro_tsyr_165, retro_tsyr_1695, retro_tsyr_1874, retro_tsyr_448, retro_tsyr_943,
Tursiops truncatus ENSTTRG00000013614 ortholog_one2one 1 retrogene
retro_ttru_1448,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1315 77.04 63.64
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2. retro_btau_1401 96.17 100.00
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3. retro_btau_1402 96.17 100.00
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Download FASTA sequences of all ENSBTAG00000005854 retrocopies