RetrogeneDB ID:

retro_vpac_151

Retrocopy
location
Organism:Alpaca (Vicugna pacos)
Coordinates:GeneScaffold_2179:49135..51117(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MGEA5
Ensembl ID:ENSVPAG00000003121
Aliases:None
Description:meningioma expressed antigen 5 (hyaluronidase) [Source:HGNC Symbol;Acc:7056]


Retrocopy-Parental alignment summary:






>retro_vpac_151
AGACCATGGGTATGGAACAGAGAAAAGAACTCTTTAGAAGGCTCCAGAAATGGGAACTAAATACATATTTGTATGCTCCA
AAAGATGACTACAAACATAGGATGTTTGGCGAGAGATGTATTCAGTGGAAGAAGCTGAGCAACTTATGACTCTCATCTCT
GCTGCACGGGAATATGAGATAGAGTTCATCTATGCTATCTCACCTGGATTGGATATTACCTTTTCTAACCCCAAGGAAGT
ATCTACCTTAAAACGCAAACTGGATCAGGTTTCTCAGTTTGGGTGCAGGTCATTTGCTTTCTTTTTGATGATATTGACCA
TAATATGTGTGCAGCTGACAAAGAGGTATTCAGTTCTTTTGCGCATGCCCAGGTCTCCATCACAAATGAAATTTATCAGT
ATCTAGGAGAGCCAGAAACGTTCCTCTTCTGTCCCACAGAATATCGTGGCACTTTCTGTTATCCAAATGTGTCTCAGTCT
CCTTACTTAAGGACTGTGGGTGAAAAGCTGCTACCTGGAATTGAGGTGCTTTGGACAGGTCCCAAAGTTGTATCTAAAGA
AATTCCAGTAGAGTCCATTGAAGAGGTTTCTAAGATTATTAAGAGAGCTCCGGTAATCTGGGATAACATTCATGCTAATG
ATTATGACCAGAAGAGACTATTTCTGGGCCCATACAAAGGAAGATCCACAGAACTCATCCCATGGTTAAAAGGAGTCCTG
GCTAATCCAAATTGTGAATTTGAAGCCAACTATGTTGCTATCCATACCCTTGCCACTTGGTACAAATCAAACATGAATGG
AGTGAGAAAAGATGTCGTAATGACTGACAGTGAAAGACAGTACAGTATCCATCCAGATAAAGTTAGAAAATGAAGGCAGT
GATGAAGATATTGAAACTGATGTACTCTATAGTCCACAGATGGCTCTAAAGTTAGCTTTAACAGAATGGCTGCAGGAGTT
TGGCGTACCTCATCAGTACAGCAGTAGGCAAGTTGCACACAGTGGCTCTAAAGCAAGTGTAGTTGATGGGACTCCTCTAG
TTGCAGCACCTTCTTTAAATGCCACAACTGTAGTTACAACAGTTTACCAGGAGCCCATTATGAGCCAAGGAGCAGCCTTG
AGTGGTGAGCCTACAGCTCTGACCAAGGAAGAAGAAAAGAAACAGCCCAGATGAGGAATCCATGGACATGGTAGTAGAAA
AACAGGAAGAAACAGACCACAAGAATGACAATCAAATACTGACTGAAATTGTCAAAGCTAAGATGGCAGAGGAATTGAAA
CCAATGGACACTGATAAAGAGAGCATAGCTGAATCAAAATCCCCAGAGATGTCTATGCAGGAAGATTGCATTAGTGATAT
TGCCCCTATGCAGACTGATGAACAGACAAACAAGGAGCAGTTTGTGCCTGGTCCAAATGAAAAGCCTTTGTACACTGCAG
AACCGGTGACTTTGGAGGATTTACAATTACTTGCTGACCTATTCTACCTTCCTTATGAACGTGGACCCAAAGGAGCACAG
ATGTTAAGGGAGTTCCAGTGGCTTCGAGCGAATAGCAGTGTTGTTAGCGTCAATTGCAAAGGGAAAGACTCTGAAAAAAT
TGAAGAATGGCGGTCACGAGCAGCCAAGTTTGAAGAGATGTGTGGACTAGTGATGGGAATGTTCACTCGGCTCTCCAGTT
GTGCCAACAGGACAATCCTTTATGACATGTACTCCTATGTTTGGGATATCAAGAGTATAATGTCTATGGTGAAGTCTTTT
GTACAGTGGTTAGGGTGTCGTAGTCATTCTTCAGCACAGTTCTTAATTGGAGACCAAGAAACCTGGGCCTTTAGAGGTGG
TCTAGCAGGAGAGTTCCAGCGTTTGCTGCCAATTGATGGGGCAAATGACCTCTTTTTTCAACCACCCCCACTGACTCCTA
CCTTCAAAGTTTATACTATCAGACCATATTTTCCTAAAGATGAGGCTTCCGTGTCCCAGATT

ORF - retro_vpac_151 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 97.45 %
Parental protein coverage: 77.86 %
Number of stop codons detected: 0
Number of frameshifts detected 5


Retrocopy - Parental Gene Alignment:

ParentalRPWV-MEQRKELFRRLQKWELNTYLYAPKDDYKHRMF-WREMYSVEEAEQLMTLISAAREYEIEFIYAIS
RPWV.MEQRKELFRRLQKWELNTYLYAPKDDYKHRMF.WREMYSVEEAEQLMTLISAAREYEIEFIYAIS
RetrocopyRPWV<MEQRKELFRRLQKWELNTYLYAPKDDYKHRMF<WREMYSVEEAEQLMTLISAAREYEIEFIYAIS
ParentalPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFAL-LFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLG
PGLDITFSNPKEVSTLKRKLDQVSQFGCRSFA..LFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLG
RetrocopyPGLDITFSNPKEVSTLKRKLDQVSQFGCRSFAF<LFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLG
ParentalEPETFLFCPTEYCGTFCYPNVSQSPYLRTVGEKLLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVI
EPETFLFCPTEY.GTFCYPNVSQSPYLRTVGEKLLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVI
RetrocopyEPETFLFCPTEYRGTFCYPNVSQSPYLRTVGEKLLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVI
ParentalWDNIHANDYDQKRLFLGPYKGRSTELIPRLKGVLTNPNCEFEANYVAIHTLATWYKSNMNGVRKDVVMTD
WDNIHANDYDQKRLFLGPYKGRSTELIP.LKGVL.NPNCEFEANYVAIHTLATWYKSNMNGVRKDVVMTD
RetrocopyWDNIHANDYDQKRLFLGPYKGRSTELIPWLKGVLANPNCEFEANYVAIHTLATWYKSNMNGVRKDVVMTD
ParentalSE-DSTVSIQIKLENEGSDEDIETDVLYSPQMALKLALTEWLQEFGVPHQYSSRQVAHSGSKASVVDGTP
SE.DSTVSIQIKLENEGSDEDIETDVLYSPQMALKLALTEWLQEFGVPHQYSSRQVAHSGSKASVVDGTP
RetrocopySE>DSTVSIQIKLENEGSDEDIETDVLYSPQMALKLALTEWLQEFGVPHQYSSRQVAHSGSKASVVDGTP
ParentalLVAAPSLNATTVVTTVYQEPIMSQGAALSGEPTALTKEEEKKQP-DEEPMDMVVEKQEETDHKNDNQILT
LVAAPSLNATTVVTTVYQEPIMSQGAALSGEPTALTKEEEKKQP.DEE.MDMVVEKQEETDHKNDNQILT
RetrocopyLVAAPSLNATTVVTTVYQEPIMSQGAALSGEPTALTKEEEKKQP>DEESMDMVVEKQEETDHKNDNQILT
ParentalEIVEAKMAEELKPMDTDKESIAESKSPEMSMQEDCISDIAPMQTDEQTNKEQFVPGPNEKPLYTAEPVTL
EIV.AKMAEELKPMDTDKESIAESKSPEMSMQEDCISDIAPMQTDEQTNKEQFVPGPNEKPLYTAEPVTL
RetrocopyEIVKAKMAEELKPMDTDKESIAESKSPEMSMQEDCISDIAPMQTDEQTNKEQFVPGPNEKPLYTAEPVTL
ParentalEDLQLLADLFYLPYEHGPKGAQMLREFQWLRANSSVVSVNCKGKDSEKIEEWRSRAAKFEEMCGLVMGMF
EDLQLLADLFYLPYE.GPKGAQMLREFQWLRANSSVVSVNCKGKDSEKIEEWRSRAAKFEEMCGLVMGMF
RetrocopyEDLQLLADLFYLPYERGPKGAQMLREFQWLRANSSVVSVNCKGKDSEKIEEWRSRAAKFEEMCGLVMGMF
ParentalTRLSNCANRTILYDMYSYVWDIKSIMSMVKSFVQWLGCRSHSSAQFLIGDQEPWAFRGGLAGEFQRLLPI
TRLS.CANRTILYDMYSYVWDIKSIMSMVKSFVQWLGCRSHSSAQFLIGDQE.WAFRGGLAGEFQRLLPI
RetrocopyTRLSSCANRTILYDMYSYVWDIKSIMSMVKSFVQWLGCRSHSSAQFLIGDQETWAFRGGLAGEFQRLLPI
ParentalDGANDLFFQPPPLTPTSKVYTIRPYFPKDEASVYKI
DGANDLFFQPPPLTPT.KVYTIRPYFPKDEASV..I
RetrocopyDGANDLFFQPPPLTPTFKVYTIRPYFPKDEASVSQI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Vicugna pacos was not studied using RNA-Seq expression data.
Vicugna pacos was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_vpac_151 retrocopy.
Vicugna pacos was not studied using FANTOM5 data.
retro_vpac_151 was not experimentally validated.

Retrocopy orthology:
Vicugna pacos does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species Parental gene accession Retrocopies number
Otolemur garnettii ENSOGAG000000100021 retrocopy
Vicugna pacos ENSVPAG00000003121 1 retrocopy
retro_vpac_151 ,





Copyright © RetrogeneDB 2014-2017