RetrogeneDB ID: retro_ogar_119

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873591.1:6278854..6281605(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000033418
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000010002
• Aliases: None
• Description: None

Sequence

>retro_ogar_119
ATGGTGCATAAGGAGAGCCAGGCGGGGCCAGAGGAGCAGGAGAACAAGCTCAGCTCCAACCCTGCTGCCTCCGCTGGGGC
ATTGTTGGCACCGCCAGTGGCTCCAGCACCATCAGTGGCTCTGGCACCTGGAGAAGACAATTCAGCCATGGTTGGGGGAG
CGGCAGTGGCCGGGGCAGCGGGATTGGCTCCAAGGTTTCTGTGTGGTGTGGTAGAAGGATTTTATGGAAGACCTTGGGTT
ATGGAACAGAGAAAAGAACTGTTTAGAAGGCTCCAGAAATGGGAATTAAATGCATACTTGTATGCCCCAAAAGATGACTA
TAAACATAGGATGTTTTGGCGAGAGATGTATTCAGTGGAGGAAGCAGAGCAACTTACGGCTCTCATCTCTGCTGCACGAG
AATGTAAGATAGAGTTCATCTATGCTATCTCACCTGGACTGGATATCACCTTTTCTAACCCCAAGGAAGTATATACATTG
AAACGTAAGCTAGACCAGGTTTGTCAATTTGGGTGCAGGTCATTTGCTTTGCTTTTTGATGATATTGAACATAATATGTG
TGCAGCAGACCAAGAGGTATTCGGTTCTTTTGCTCATGCCCAGGTCCACATCACAAATGAAATTTATCAGTACCTAGAAG
AGCCAGAAACTTTCCTCTTCTGTCCCACAGAATACTGTGGCACTTTCTGTTATCCAAATGTGTTTGAGTCTCCTTATTTA
AGGACTGTGGGTGAAAAGCTTCTACCTGGAATTGAGGTGCTTTGGACAGGTCCCAAAGTTATTTCTAAAGAAATTCCAGT
AGAGTCCATTGAAGAGGTTTCTAAGATTATTAAGAGAGCTCCAGTAATCTGGGATAACATTCATGCTGATGACTACGATC
ACAAGAGACTATTTCTGGGCCCATACAAAGGAAGATCCACAGAACTCATCCCACGATTAAAAGGAGTCCTTACTAATCCA
AATTGTGAATTTGAAGCCAACTATGTTGCTATCCACACCCTTGCCACTTGGTACAAATCAAACATGAATGGATTGAGAAA
AGATACAGTGATGGAAAGTGAAGACAGTACTATGTCAATCCAGATGAAGTTAGAAAATGAAGGCAGTAATGAAGATATTG
AAACTGACGTGCTTTATAGTCCACAGATGGCTCTAAAACTAGCTTTAACAGAATGGTTGCAGGAGTTTGGTGTACCTCCT
CAGTATAACAGTAGCCAAATTGCACAAAGTGAAGCAAGTGATGAGACTCTCCAAGTTGCAGCACCCTCTTTAAATGTCAC
ACCGGTAGAAACAACAGTTTACCAGGATCCCATTATGAGCCAGGGAGCAGCCTTGAGTGGTGAACCTACAGCTTTGACCA
AGGAAGAAGGCAAGAAACAACTTGATGAAGAGCCCATGGACATGGCAGTGGAAGGACAGGAAGCAACACACCACAAGATT
GATGATCAAATATTGACTGACACTATGGAAGCTAAAATGGCAGAGGAATGGAAACCAATGGACACTGATAAAGAGAGCGT
AGCTGAATCAAAATCTTCAGAGACTTCTATGCAGGAAGACAGCATTAGTGATACTGCCCCTATGCAAATTGATGAGCAGA
CAGACAAGCAACAGTTTGTGCCAGGTCCAAACGAAAAGCCATGTTACACCATAGAACCAGTGACTTTGGAGGATTTGCAG
TTACTTGCTGATCTGTTCTACCTTCCTTATGAGCATGGACCGAAAGGAGCACAAATGTTACGGGAATTCTGGTGGCTTAG
AGCAAATAGCAGTGTTGTCAGTATCAATTACAAAGGAAAAGATTCTGAAAAAATTGAAGAATGGCGGTCACGAGCAGCCA
AGTTTGAAGAGATGTGTGGACTAGTGATGAGAATGTTCACTCGGTTCTCCAATTGTGCCAACAAGATGATCATTTATGAC
ATGTACTCCTATGTTTGGGATATCAAGAGTACAGTGTCTGTAGTGAAGTCTTTTGTACAATGGCTAGGGTGTCGTAGTCA
TTCTTCAGCCCAGTTCTTAATTCAAGACCAAGAACCCTGGTCCTTGACAGGTGGTCTAGCAGGCGAGTTCCAGCATTTGC
TGCCAATTGATGGGGCAAACGATCTCTTCTTTCAGCCACCCCCACAGATCCCTACCTCCAAAGTTTATACCATCAGACCA
TATTTTCCTAAAGATGAGGCTTCTGTGTACAAGATTTGCAGAGAAATGTATGATGGTGGAGTGGGTTTACCTTTTGAAAG
TCAGCCTGACCTTATTGGAGACAAGTTAGTAGGAGGGCTACTTACTCTGAGCCTGGATTACTGCTTTGTCCTAGAAGATG
AAGATGACATATGTGGTTATGCCCTGGGCACTGTAGATGTGACACCCTTTATTAAGAAATGCAAAAATTCCTGGATTCCC
TTCATGCAACAAAAGTATGCGAAGCCAAATGGTGACAAAGACCTCTCTGAGGCTGAGAAAATAATGTTGAGTTTCTATGA
AGAACAAGAAATGCTGCCAGAAACTTTCCTTGCCAACTTCCCTTCTCTGATAAAGATGGATATTCACAGAAAAGTAACTG
ACCCAAGTGTGGCTAAAAGCATGATGGCCTGCCTCCTGTCTTCACTGAAGGCTAATGGCTCCTGGGGAGCTTTCTGTGAA
GTGAAACCAGATGATAAAAGAATTCTGGAATTTTATAGCAAGTTAGGCTATTTTGAAATTGCAAAAATGGAAGGATTTCC
AAAGAATGTGGTTATACTTGGTCGGAGCCTG

Alignment

ORF - retro_ogar_119 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.76 %
• Parental protein coverage: 96.72 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PPVAPAPGEDNSVVVGGAAVAGAAGRARRFLCGVVEGFYGRPWVMEQRKELFRRLQKWELNTYLYAPKDD
          P.VA.APGEDNS..VGGAAVAGAAG.A.RFLCGVVEGFYGRPWVMEQRKELFRRLQKWELN.YLYAPKDD
Retrocopy PSVALAPGEDNSAMVGGAAVAGAAGLAPRFLCGVVEGFYGRPWVMEQRKELFRRLQKWELNAYLYAPKDD

Parental  YKHRMFWREMYSVEEAGNLFVFIKGIEQYNVMFVFFLSFGYSTVTSQGGKYFTLSVTIKYVSQFGCRSFA
          YKHRMFWREMYSVEEA..L...I.........F....S.G.....S......TL......V.QFGCRSFA
Retrocopy YKHRMFWREMYSVEEAEQLTALISAARECKIEFIYAISPGLDITFSNPKEVYTLKRKLDQVCQFGCRSFA

Parental  LLFDDIDHNMCAADKEVFSSFAHAQVSITNEIYQYLGEPETFLFCPTEYCGTFCYPNVSQSPYLRTVGEK
          LLFDDI.HNMCAAD.EVF.SFAHAQV.ITNEIYQYL.EPETFLFCPTEYCGTFCYPNV..SPYLRTVGEK
Retrocopy LLFDDIEHNMCAADQEVFGSFAHAQVHITNEIYQYLEEPETFLFCPTEYCGTFCYPNVFESPYLRTVGEK

Parental  LLPGIEVLWTGPKVVSKEIPVESIEEVSKIIKRAPVIWDNIHANDYDQKRLFLGPYKGRSTELIPRLKGV
          LLPGIEVLWTGPKV.SKEIPVESIEEVSKIIKRAPVIWDNIHA.DYD.KRLFLGPYKGRSTELIPRLKGV
Retrocopy LLPGIEVLWTGPKVISKEIPVESIEEVSKIIKRAPVIWDNIHADDYDHKRLFLGPYKGRSTELIPRLKGV

Parental  LTNPNCEFEANYVAIHTLATWYKSNMNGVRKDVVMTDSEDSTVSIQIKLENEGSDEDIETDVLYSPQMAL
          LTNPNCEFEANYVAIHTLATWYKSNMNG.RKD.VM..SEDST.SIQ.KLENEGS.EDIETDVLYSPQMAL
Retrocopy LTNPNCEFEANYVAIHTLATWYKSNMNGLRKDTVM-ESEDSTMSIQMKLENEGSNEDIETDVLYSPQMAL

Parental  KLALTEWLQEFGVPHQYSSRQVAHSGAKASVVDGTPLVAAPSLNATTVVTTVYQDPIMSQGAALSGEPTA
          KLALTEWLQEFGVP.QY.S.Q.A.S.A.....D.T..VAAPSLN.T.V.TTVYQDPIMSQGAALSGEPTA
Retrocopy KLALTEWLQEFGVPPQYNSSQIAQSEAS----DETLQVAAPSLNVTPVETTVYQDPIMSQGAALSGEPTA

Parental  LTKEEEKKQPDEEPMDMVVEKQEETDHKNDNQILSEIVEAKMAEELKPMDTDKESIAESKSPEMSMQEDC
          LTKEE.KKQ.DEEPMDM.VE.QE.T.HK.D.QIL....EAKMAEE.KPMDTDKES.AESKS.E.SMQED.
Retrocopy LTKEEGKKQLDEEPMDMAVEGQEATHHKIDDQILTDTMEAKMAEEWKPMDTDKESVAESKSSETSMQEDS

Parental  INDIAPMQTDEQTNKEQFVPGPNEKPLYTAEPVTLEDLQLLADLFYLPYEHGPKGAQMLREFQWLRANSS
          I.D.APMQ.DEQT.K.QFVPGPNEKP.YT.EPVTLEDLQLLADLFYLPYEHGPKGAQMLREF.WLRANSS
Retrocopy ISDTAPMQIDEQTDKQQFVPGPNEKPCYTIEPVTLEDLQLLADLFYLPYEHGPKGAQMLREFWWLRANSS

Parental  VVSVNCKGKDSEKIEEWRSRAAKFEEMCGLVMGMFTRLSNCANRTILYDMYSYVWDIKSIMSMVKSFVQW
          VVS.N.KGKDSEKIEEWRSRAAKFEEMCGLVM.MFTR.SNCAN..I.YDMYSYVWDIKS..S.VKSFVQW
Retrocopy VVSINYKGKDSEKIEEWRSRAAKFEEMCGLVMRMFTRFSNCANKMIIYDMYSYVWDIKSTVSVVKSFVQW

Parental  LGCRSHSSAQFLIGDQEPWAFRGGLAGEFQRLLPIDGANDLFFQPPPLTPTSKVYTIRPYFPKDEASVYK
          LGCRSHSSAQFLI.DQEPW...GGLAGEFQ.LLPIDGANDLFFQPPP..PTSKVYTIRPYFPKDEASVYK
Retrocopy LGCRSHSSAQFLIQDQEPWSLTGGLAGEFQHLLPIDGANDLFFQPPPQIPTSKVYTIRPYFPKDEASVYK

Parental  ICREMYDDGVGLPFQSQPDLIGDKLVGGLLSLSLDYCFVLEDEDGICGYALGTVDVTPFIKKCKISWIPF
          ICREMYD.GVGLPF.SQPDLIGDKLVGGLL.LSLDYCFVLEDED.ICGYALGTVDVTPFIKKCK.SWIPF
Retrocopy ICREMYDGGVGLPFESQPDLIGDKLVGGLLTLSLDYCFVLEDEDDICGYALGTVDVTPFIKKCKNSWIPF

Parental  MQEKYTKPNGDKELSEAEKIMLSFHEEQEVLPETFLANFPSLIKMDIHKKVTDPSVAKSMMACLLSSLKA
          MQ.KY.KPNGDK.LSEAEKIMLSF.EEQE.LPETFLANFPSLIKMDIH.KVTDPSVAKSMMACLLSSLKA
Retrocopy MQQKYAKPNGDKDLSEAEKIMLSFYEEQEMLPETFLANFPSLIKMDIHRKVTDPSVAKSMMACLLSSLKA

Parental  NGSRGAFCEVRPDDKRILEFYSKLGCFEIAKMEGFPKDVVILGRSL
          NGS.GAFCEV.PDDKRILEFYSKLG.FEIAKMEGFPK.VVILGRSL
Retrocopy NGSWGAFCEVKPDDKRILEFYSKLGYFEIAKMEGFPKNVVILGRSL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_119 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000010002	1 retrocopy	retro_ogar_119 ,
Vicugna pacos	ENSVPAG00000003121	1 retrocopy	retro_vpac_151,