RetrogeneDB ID: retro_ttru_1073

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_102129:2260..2964(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CDC37
• Ensembl ID: ENSTTRG00000009560
• Aliases: None
• Description: cell division cycle 37 [Source:HGNC Symbol;Acc:1735]

Sequence

>retro_ttru_1073
GAAGCTGAAGGGGCTGGAGGTGGCCAAGGGCGAGGGCAGCTGTAACGGCTGCAGGCTAAGGCAGAGCAGCTGCGCAAGGA
GGAGCGTAGCTGGGAGCAGAAGCTAGAGGAGATGTGCAAGAAGGAGAAGAGCATGGCCTGGAACGTGGACCCGCTCAGCA
AGGACGGCTTCAGCAAGAGCATAGTCAATACCAAGCCTGAGCAAGCGGAGGTGGAGTTGGAACAGGTGAGGGAGCAGAAA
CACAAAACCTTCATGGAAAAGTATGAGAAACAGATCAAGCACTTCAGCATGCTCCACTGCTGGGATGACAGCCAGAAGTA
CCTGTTGGACAACGTCCACCTGGTGTGCGAGGAGACCGCCAACTACCTGGTTATTTGGTGCTTTGACCTAAAGGTGGAGG
AGAAATGTGCACTGATGGAGCAGGTGGCCCACCAGACCATTGTCATGCAGTTCATCCTGGAGCTGGCCAAGAGCCTGAAG
GTGGACCCTCGTGCCTGCTTCTGGCAGTTCTTCACCAAGATCAAGACTGCCGACCGTCAGTACATGGAGGGCTTCAATGA
CGAGTTGGAGGCCTTCAAAGACTGCGTGTGGGGCCGGGCCAAGCTGCGCATCAAGGTCATGAAGGAGTACGAGGAGGAGG
AGTGCAAGCAGCAGCTTGGCCGAGCAGCCTGGACCCCATCAAGGTATACGAGTCCCTCCCTGAG

Alignment

ORF - retro_ttru_1073 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.7 %
• Parental protein coverage: 62.27 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  DLEVAEGEGSRAELERLQAEAQQLRKEERSWEQKLEEMRKKEKSMPWNVDTLSKDGFSKSMVNTKPERAE
          ..E.A.G...R..L.RLQA.A.QLRKEERSWEQKLEEM.KKEKSM.WNVD.LSKDGFSKS.VNTKPE.AE
Retrocopy EAEGAGGGQGRGQL*RLQAKAEQLRKEERSWEQKLEEMCKKEKSMAWNVDPLSKDGFSKSIVNTKPEQAE

Parental  EESEEVREQKHKTFVEKYEKQIKHFGMLRRWDDSQKYLSDNVHLVCEETANYLVIWCIDLEVEEKCALME
          .E.E.VREQKHKTF.EKYEKQIKHF.ML..WDDSQKYL.DNVHLVCEETANYLVIWC.DL.VEEKCALME
Retrocopy VELEQVREQKHKTFMEKYEKQIKHFSMLHCWDDSQKYLLDNVHLVCEETANYLVIWCFDLKVEEKCALME

Parental  QVAHQTIVMQFILELAKSLKVDPRACFRQFFTKIKTADRQYMEGFNDELEAFKDRVRGRAKLRIEKAMKE
          QVAHQTIVMQFILELAKSLKVDPRACF.QFFTKIKTADRQYMEGFNDELEAFKD.V.GRAKLRI.K.MKE
Retrocopy QVAHQTIVMQFILELAKSLKVDPRACFWQFFTKIKTADRQYMEGFNDELEAFKDCVWGRAKLRI-KVMKE

Parental  YEEEERRKRLG-PGGLDPVEVYESLPE
          YEEEE....LG.P..LDP..VYESLPE
Retrocopy YEEEECKQQLG<PSSLDPIKVYESLPE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1073 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1073 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000009437	1 retrocopy	retro_fcat_1338,
Gorilla gorilla	ENSGGOG00000008098	1 retrocopy	retro_ggor_2299,
Macropus eugenii	ENSMEUG00000002278	1 retrocopy	retro_meug_1373,
Pongo abelii	ENSPPYG00000009551	1 retrocopy	retro_pabe_2790,
Tursiops truncatus	ENSTTRG00000009560	1 retrocopy	retro_ttru_1073 ,