RetrogeneDB ID: retro_ttru_10

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_90054:4582..5113(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSTTRG00000004010
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTTRG00000010901
• Aliases: None
• Description: None

Sequence

>retro_ttru_10
TTTACCACTCCCAAAGGCCCTAAGCCCCATTCTAGATGTTCAGACTGGGCAAGTGCAGTCGAAGAAGATGAAATGAGGAC
TAGAGTTAACAACGAAATTTCAAGATATAAAAGGAAACTCCTCATAAATGACTTTGGAAGGGAGAGAAAATCATCATTAG
GAAGTTCGGATTCAAAGGAGTCTATGTCAGCATTGCCAGCTGACTTGGAGACCGATGAAAGTGTCCTGATGAGAAGACAG
AAGCAGATCGACTATGGGAAGAACACCATCGCCTACGATCACTATATTAAAGTCCCAAGGCACCTTCAACAGCCTGGCAT
TCATCCCAAAACCCCCAACAAATTCAAGAAGTATAGTCCACGATCGTGGGACCAGCAGATCAAACTCTGGAAGGTGGCTC
TGCATTTTTGGAATCCTCCAGCGGAAGAAGGATGTGATTTGCAAGAAATACGTCCTGTTGACCTCGGGGAGATGGAGATG
GAATCCGCGGAGAGCAGCTCTGAGTACCAGACGAGCTCTCAGGATAACTTC

Alignment

ORF - retro_ttru_10 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.13 %
• Parental protein coverage: 82.41 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  FTTPEGPKPRSRCSDWASAVEEDEMRTRVNKEIARYKRKLLINDFGRERKSSSGSSDSKESMSALPADLE
          FTTP.GPKP.SRCSDWASAVEEDEMRTRVN.EI.RYKRKLLINDFGRERKSS.GSSDSKESMSALPADLE
Retrocopy FTTPKGPKPHSRCSDWASAVEEDEMRTRVNNEISRYKRKLLINDFGRERKSSLGSSDSKESMSALPADLE

Parental  TDESVLMRRQKQINYGKNTIAYDRYIKEVPRHLRQPGIHPKTPNKFKKYSRRSWDQQIKLWKVALHFWDP
          TDESVLMRRQKQI.YGKNTIAYD.YIK.VPRHL.QPGIHPKTPNKFKKYS.RSWDQQIKLWKVALHFW.P
Retrocopy TDESVLMRRQKQIDYGKNTIAYDHYIK-VPRHLQQPGIHPKTPNKFKKYSPRSWDQQIKLWKVALHFWNP

Parental  PAEEGCDLQEIRPVDLGEMETESAESSSESRTSSQDNF
          PAEEGCDLQEIRPVDLGEME.ESAESSSE..TSSQDNF
Retrocopy PAEEGCDLQEIRPVDLGEMEMESAESSSEYQTSSQDNF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_10 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_10 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 11 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000001328	1 retrocopy	retro_btau_1456,
Cavia porcellus	ENSCPOG00000000031	1 retrocopy	retro_cpor_364,
Mus musculus	ENSMUSG00000004642	1 retrocopy	retro_mmus_1169,
Otolemur garnettii	ENSOGAG00000009750	1 retrocopy	retro_ogar_1463,
Pteropus vampyrus	ENSPVAG00000002807	2 retrocopies	retro_pvam_490, retro_pvam_941,
Rattus norvegicus	ENSRNOG00000037162	2 retrocopies	retro_rnor_1864, retro_rnor_2016,
Tarsius syrichta	ENSTSYG00000000376	2 retrocopies	retro_tsyr_1595, retro_tsyr_482,
Tursiops truncatus	ENSTTRG00000010901	1 retrocopy	retro_ttru_10 ,