RetrogeneDB ID: retro_tsyr_929

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_24422:15361..16469(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KRT84
• Ensembl ID: ENSTSYG00000006538
• Aliases: None
• Description: keratin 84 [Source:HGNC Symbol;Acc:6461]

Sequence

>retro_tsyr_929
GGCAGCAGCAGTAGCAGCTTCTGGGGCGACCTGGGCGCCGGCCTGGGCCTGGGTGGAGGCTACACAGGGGCTGGTGGCAT
CACAGCCGTCACCGTGAACCAGAGCCTGCTGAGCCCCCTTAAGTTGGAGGTGGACCCCAACATCCAGGCGGTGCGCACCC
AGGAGAAAGAGCAGATAAGGACCCTCAACAAGTTTGCCTCCTTCATCGACAAGGTGCAGTTCTTGGAGCAGCAGAACAAA
ATGCTGGAGACCAAGTGGAGCCTCCTGCAGCAGCAGAAGACGGCCCGTAGCAACATGGACAACATGTTCGAGAGTTACAT
CAACAACCTCCGGCGGCAGCTGGACACGCTGGGCCAGGAGGAGCTGAAGCTGGAGGCGGAGCTGGGCAACATGCAGGGCC
TGGTGGGGGACTTCAAGGACAAGTACGAGGATAAAATCAACAAGCGGACAGAGATGGAGAATGAATTCGTCCTCACCAAG
AAGGATGTGGATGAAGCTTACATGAACTAGGTGGAGCTGGAGTCTCGCCTGGAGGGGCTGACTGACGAGATCCACTTCCT
CAGGCAGCCGTATGAGGAGGAGATCCGTGAGCTGCAGTCTCAGATCTCGGACACATCCGTGGTCCTGTCCATGGACAACA
GCCGCTCCCTGGACAGGGACGGCATCATCGCTGAGGTCCGCGCCCAGTACGAAGAGATCGCCAACCGCAGCGGGGCCGAG
GCCAAGAGCATGTACCAGACCAAGTACGAGGAGCTGCAGACGCTGGCCGGGAAGCATGGGGATGACTTGCGTCGCACCAA
GACGGAGATCTCCGAGATGAACCGCAACAGCAGCTGGCTGCAGGCTGAGATCGAGGGTCTTAAAGGCCAGAGGGCTTCCC
TGGAGGTCGCCATCGCAGATGCAGAGCAGCGTGGGAAGATGGCCGTTAAGGACGCCAACAACAAGCTGGCCGAGCTGGAG
GCCGCCCTGCAGCGGGCCAAGCAGGACGTGGCGCGGCGGCTGGCGCGAGTACCAGGAGCTCGTGAACGTCAAGCTGGCCT
TGGACATCGAGATCGCCACCTGCCGGAAGCTGCTGGAGGGCGAGGAGAGCCGGCTGGAGTCTGGCGTG

Alignment

ORF - retro_tsyr_929 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.41 %
• Parental protein coverage: 76.18 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GSGLGYGFGGPGFGYRVGGLGVPIAPSITAVTVNQSLLTPLNLEIDPNAQRVKKDEKEQIKTLNNKFASF
          GS......G..G.G...GG.G...A..ITAVTVNQSLL.PL.LE.DPN.Q.V...EKEQI.TL.NKFASF
Retrocopy GSSSSSFWGDLGAGLGLGG-GYTGAGGITAVTVNQSLLSPLKLEVDPNIQAVRTQEKEQIRTL-NKFASF

Parental  IDKVRFLEQQNKLLETKWSFLQEQKRVRSNLEPLFEGYISTLRRELEVQVSDQARLQAERNHMQDVLEGF
          IDKV.FLEQQNK.LETKWS.LQ.QK..RSN....FE.YI..LRR.L.........L.AE...MQ.....F
Retrocopy IDKVQFLEQQNKMLETKWSLLQQQKTARSNMDNMFESYINNLRRQLDTLGQEELKLEAELGNMQGLVGDF

Parental  KKKYEEEVVLRANAENEFVALKKDVDTAFLSKSDLEANMEALIQEIDFLKTLYMEEIQLLQSHISETSVI
          K.KYE.....R...ENEFV..KKDVD.A......LE...E.L..EI.FL...Y.EEI..LQS.IS.TSV.
Retrocopy KDKYEDKINKRTEMENEFVLTKKDVDEAYMN*VELESRLEGLTDEIHFLRQPYEEEIRELQSQISDTSVV

Parental  VKMDNSRDLNLDGIIAEVKAQYEEVARRSRADAEAWYQTKYEEMQVTAGQHCDNLRNTRNEINELTRLIQ
          ..MDNSR.L..DGIIAEV.AQYEE.A.RS.A.A...YQTKYEE.Q..AG.H.D.LR.T..EI.E..R...
Retrocopy LSMDNSRSLDRDGIIAEVRAQYEEIANRSGAEAKSMYQTKYEELQTLAGKHGDDLRRTKTEISEMNRNSS

Parental  RLKAEIEHAKAQRAKLEAAVAEAEQQGEVALNDAKAKLADLEAALQQAKQDMARQL-REYQELMNAKLGL
          .L.AEIE..K.QRA.LE.A.A.AEQ.G..A..DA..KLA.LEAALQ.AKQD.AR.L.REYQEL.N.KL.L
Retrocopy WLQAEIEGLKGQRASLEVAIADAEQRGKMAVKDANNKLAELEAALQRAKQDVARRL>REYQELVNVKLAL

Parental  DIEIATYRRLLEGEESRICEGV
          DIEIAT.R.LLEGEESR...GV
Retrocopy DIEIATCRKLLEGEESRLESGV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_929 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000006538	3 retrocopies	retro_tsyr_1195, retro_tsyr_1331, retro_tsyr_929 ,