RetrogeneDB ID: retro_tsyr_1195

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_34340:4097..5198(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KRT84
• Ensembl ID: ENSTSYG00000006538
• Aliases: None
• Description: keratin 84 [Source:HGNC Symbol;Acc:6461]

Sequence

>retro_tsyr_1195
GGCAGATTCTGGGGCAGCCTGGGCACCAGCCTGGGTCTGGGTGGAGGTTATACTGGGGCCAGTGGCATCACAGCCATCAC
TGTGAACCAGAGCCTGCTGAGTCCCCTTAAGCTGGAGGTGGGCCCCAACATCCAGGCTGTGCGCACCCAGGAGAAGGAGT
AGATCAAGACCCTCAACAACAAGTTTGCCTCCTTCATCGACAAGGTGCGGTTCCTGGAGCAGCAGAACAAAATGCTGCAG
ACCAAGTGGAGCCTCCTGCAGCAGCAGAAGACGGCCCACAGCAACATGGACAACATGTTTGAGGAGAGTTACATCAACAA
CTTCTGGCAGCAGCTGGACACGCTGGGCCAGGAGAAGCTGAAGCTGGAGGCAGAGCTGGGCAACATGCAGGGCCTGGTGG
AGGACTTCAAGAACAAGTACAAGGATGAAATCAACAAGCAGATGGAGATGGAGAATGAATTCGTCCTCATCAAGAAGGAT
GTGGATGAAGCTTACATGAATAAGGTGGAGCTGGAGTCTCGCCTGGAGGGGCTGACGGTCGAGATCAACTTCCTCAGGCA
GCTGTATGAGGAGGAGATCCGTGAACTGCAGTCCCAGATCTTGGACACATCCGTGGTCCTGTCCGTGGACAGCAGCCGCT
CCCTGGACATGAACGGCATCATCACTGAGGTCCGTACCCAGTATGAAGAGATCGCCAACTGCAGCCAGGCCAAGGCCAAG
AGCATGGACCAGACCAAGTGCAAGGAGCTGCAAACGCTGGCCCAGAAGCACGGGGATGACTTGTGCCGCACCAAGATGGA
GATCTCCGAGGTGAACTGGAACATCAGCCGGCTGCAGGCTGAGATCGAGGGTCTTAAAGGCCAGAGGGCTTCCCTGGAGG
CCGCCATCACAGACGCAGAGCAGCGTGGGGAGATGGCCGTGAAGGATGCCAACAACAAGCTGGTCAAACTGGAGGCCGCC
CTGCAGCGGGCCAAGCAGGACATGACACGGCAGCTGCGTGAGTACCAGGAGCTCGTGAACATCAAGCTGGCGCTGGACAT
CGAGATCGCCACCTACCGGAAGCTGCTGGAGGGCGAGGAGAGCCTGCTGGAGTCTGGCATG

Alignment

ORF - retro_tsyr_1195 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 55.71 %
• Parental protein coverage: 75.36 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GYGFGGPGFGYRVGGLGVPIAPSITAVTVNQSLLTPLNLEIDPNAQRVKKDEKEQIKTLNNKFASFIDKV
          G...G..G.....GG.G...A..ITA.TVNQSLL.PL.LE..PN.Q.V...EKE.IKTLNNKFASFIDKV
Retrocopy GRFWGSLGTSLGLGG-GYTGASGITAITVNQSLLSPLKLEVGPNIQAVRTQEKE*IKTLNNKFASFIDKV

Parental  RFLEQQNKLLETKWSFLQEQKRVRSNLEPLFE-GYISTLRRELEVQVSDQARLQAERNHMQDVLEGFKKK
          RFLEQQNK.L.TKWS.LQ.QK...SN....FE..YI......L.........L.AE...MQ...E.FK.K
Retrocopy RFLEQQNKMLQTKWSLLQQQKTAHSNMDNMFEESYINNFWQQLDTLGQEKLKLEAELGNMQGLVEDFKNK

Parental  YEEEVVLRANAENEFVALKKDVDTAFLSKSDLEANMEALIQEIDFLKTLYMEEIQLLQSHISETSVIVKM
          Y..E.......ENEFV..KKDVD.A...K..LE...E.L..EI.FL..LY.EEI..LQS.I..TSV....
Retrocopy YKDEINKQMEMENEFVLIKKDVDEAYMNKVELESRLEGLTVEINFLRQLYEEEIRELQSQILDTSVVLSV

Parental  DNSRDLNLDGIIAEVKAQYEEVARRSRADAEAWYQTKYEEMQVTAGQHCDNLRNTRNEINELTRLIQRLK
          D.SR.L...GII.EV..QYEE.A..S.A.A....QTK..E.Q..A..H.D.L..T..EI.E....I.RL.
Retrocopy DSSRSLDMNGIITEVRTQYEEIANCSQAKAKSMDQTKCKELQTLAQKHGDDLCRTKMEISEVNWNISRLQ

Parental  AEIEHAKAQRAKLEAAVAEAEQQGEVALNDAKAKLADLEAALQQAKQDMARQLREYQELMNAKLGLDIEI
          AEIE..K.QRA.LEAA...AEQ.GE.A..DA..KL..LEAALQ.AKQDM.RQLREYQEL.N.KL.LDIEI
Retrocopy AEIEGLKGQRASLEAAITDAEQRGEMAVKDANNKLVKLEAALQRAKQDMTRQLREYQELVNIKLALDIEI

Parental  ATYRRLLEGEESRICEGV
          ATYR.LLEGEES....G.
Retrocopy ATYRKLLEGEESLLESGM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1195 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Tarsius syrichta	ENSTSYG00000006538	3 retrocopies	retro_tsyr_1195 , retro_tsyr_1331, retro_tsyr_929,