RetrogeneDB ID: retro_tsyr_845

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_215309:1450..1780(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TMEM199
• Ensembl ID: ENSTSYG00000014137
• Aliases: None
• Description: transmembrane protein 199 [Source:HGNC Symbol;Acc:18085]

Sequence

>retro_tsyr_845
TCCAAATTTTACCTTCATGAGCTTCTAGAAGGCAGTGAAATCTCTCTCCCAGAGGTTGTGAAGCCTCTGTGGAATCCAGA
ATTAGTTGTCCAACTGGAGAAGAGTAAGATACAGCTGGCCAATGAAGAATATGAGTGACTCACCTGCAATATAACCTGTC
AGGATTCAAGGCATGATAGGACTCTCAGTGACCTGGGAAAGCAAGTGAGATCAGTGAAGGCTCTGGCCATCACCATCTTC
AGCTTCATTGTCATGGTGGCACCTGCCTTCGTCTCCACTTCCCTTGGAAGCCAGTGTATCTTCACAGAAATGGCCTCACG
GGTGCTGGCT

Alignment

ORF - retro_tsyr_845 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.09 %
• Parental protein coverage: 80.29 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SKLYLHELLEGSEIYLPEVVKPPRNPELVARLEKIKIQLAHEEYERITRNVTRQDSRHGGTLSDLGKQVR
          SK.YLHELLEGSEI.LPEVVKP..NPELV..LEK.KIQLA.EEYE..T.N.T.QDSRH..TLSDLGKQVR
Retrocopy SKFYLHELLEGSEISLPEVVKPLWNPELVVQLEKSKIQLANEEYE*LTCNITCQDSRHDRTLSDLGKQVR

Parental  SVKALVITIFNFIVTVAAAFVCTFLGSQYVFTEMASRVLA
          SVKAL.ITIF.FIV.VA.AFV.T.LGSQ..FTEMASRVLA
Retrocopy SVKALAITIFSFIVMVAPAFVSTSLGSQCIFTEMASRVLA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_845 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000012307	1 retrocopy	retro_mluc_1156,
Monodelphis domestica	ENSMODG00000019239	1 retrocopy	retro_mdom_1457,
Otolemur garnettii	ENSOGAG00000003338	1 retrocopy	retro_ogar_801,
Tarsius syrichta	ENSTSYG00000014137	1 retrocopy	retro_tsyr_845 ,