RetrogeneDB ID: retro_ogar_801

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873528.1:2549907..2550293(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TMEM199
• Ensembl ID: ENSOGAG00000003338
• Aliases: None
• Description: transmembrane protein 199 [Source:HGNC Symbol;Acc:18085]

Sequence

>retro_ogar_801
ATGGCGTCTTCCTTGCTAGCAGGCAAGCAACTAGTACGTGCTTTGGGCCCCAGTGGGGAGCTGGAGCCATAGCAGCTGCC
CCAAAAGTTGCAGGCTGAGCTTGAGACTGCGCTGGGGAAAAAGCACACAGGACATGATAGCTCCAGCGGCCCCCAACACT
TTCGTCTGATCCGGGATCGACATTAGCACCCGAGAGAAAGGGATTCCACAGTATACGAGCTCCTGGAAGGCAGTGAAATC
TATCTCCCAGAGGTTGTGCAGCCTCCTCGGAACCCAGAGCTAGTTGCCGGCTGGAGAAGATTAAGATACAGCTGGCCAAT
GAGGAATATAAGCGGATCACCGGCAAAGTCACCTGTCAGGACTCAAGGCATGATGGGAGTCTCAGC

Alignment

ORF - retro_ogar_801 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.48 %
• Parental protein coverage: 64.42 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MASSLLAGERLVRALGPGGELEPQQLPRKLRAELEAALGKKPAGDDSSTGPQRLVSFRLIRDLHQHLRER
          MASSLLAG..LVRALGP.GELEP.QLP.KL.AELE.ALGKK..G.DSS.GPQ....FRLIRD.H.H.RER
Retrocopy MASSLLAGKQLVRALGPSGELEP*QLPQKLQAELETALGKKHTGHDSSSGPQH---FRLIRDRH*HPRER

Parental  DSTVYLHELLEGSEIYLPEVVKPPRNPELVA-RLEKIKIQLANEEYKRITRNVTCQDSRHDESLS
          DSTVY..ELLEGSEIYLPEVV.PPRNPELVA.RLEKIKIQLANEEYKRIT..VTCQDSRHD.SLS
Retrocopy DSTVY--ELLEGSEIYLPEVVQPPRNPELVA<RLEKIKIQLANEEYKRITGKVTCQDSRHDGSLS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_801 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Myotis lucifugus	ENSMLUG00000012307	1 retrocopy	retro_mluc_1156,
Monodelphis domestica	ENSMODG00000019239	1 retrocopy	retro_mdom_1457,
Otolemur garnettii	ENSOGAG00000003338	1 retrocopy	retro_ogar_801 ,
Tarsius syrichta	ENSTSYG00000014137	1 retrocopy	retro_tsyr_845,