RetrogeneDB ID: retro_tsyr_561

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_139985:759..1119(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSTSYG00000014743
• Aliases: None
• Description: None

Sequence

>retro_tsyr_561
AATGAATGGTCATTGAAGATAAGAAAGAAAATGAGAGTTGTTGACAGGCAAATATGAGATATCCAAAGAGAAGAAGAAAA
AGTGAAATGATCTGTGAAAGGTGCTGCCAAGAAAGGCCAGAAGGATGTCTGTGTAGTTCTGGCCAAGGAGATGATCAAGT
CCAGGAAGACTGTGAGCAATCTGTATGCATCCAAAGCTCCCATGAACTTGATGCTCAGGGGCATGAAGAACCAGCTCGTG
GTTCAGCGAGGGGCTGGCTCCCTGCAAAAGAGCACAGAAGCGATGAAGGCCATGCAAAGTCTCGTAAAGATGTCAGAAAG
TCAGGCCACCATGTGACAGTTGTCCAAACAGATGATAGAG

Alignment

ORF - retro_tsyr_561 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.83 %
• Parental protein coverage: 75.47 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNS
          NEWSLKIRK.MRVVDRQI.DIQREEEKVK.SVK.AAKKGQKDVCVVLAKEMI.SRK.VS.LYASKA.MN.
Retrocopy NEWSLKIRKKMRVVDRQI*DIQREEEKVK*SVKGAAKKGQKDVCVVLAKEMIKSRKTVSNLYASKAPMNL

Parental  VLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMK
          .L.GMKNQL.V.R.AGSLQKSTE.MKAMQSLVK..E.QATM..LSK.M..
Retrocopy MLRGMKNQLVVQRGAGSLQKSTEAMKAMQSLVKMSESQATM*QLSKQMIE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_561 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 6 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000009111	1 retrocopy	retro_meug_178,
Microcebus murinus	ENSMICG00000005492	3 retrocopies	retro_mmur_1110, retro_mmur_1396, retro_mmur_47,
Mus musculus	ENSMUSG00000053119	1 retrocopy	retro_mmus_1683,
Ochotona princeps	ENSOPRG00000002191	2 retrocopies	retro_opri_18, retro_opri_436,
Sorex araneus	ENSSARG00000008917	1 retrocopy	retro_sara_13,
Tarsius syrichta	ENSTSYG00000014743	1 retrocopy	retro_tsyr_561 ,