RetrogeneDB ID: retro_tsyr_1737

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_563557:349..643(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RNASEK
• Ensembl ID: ENSTSYG00000006902
• Aliases: None
• Description: ribonuclease, RNase K [Source:HGNC Symbol;Acc:33911]

Sequence

>retro_tsyr_1737
CTGGCGTCGCTCCTGAGCTGTGGGCGGAAGCTGGCTGCCTGTGGCATCACCCTCATCAGTGCCTGGGGAGCGATTAGGTT
GACAATGCTCGGAATATTTCTCAATGTCCATTCCGCTGTGTTAGTTGAGGACGTTCACCGAGAAAGATTTTGAGAATGGC
CCCCAGAACATCTAGAACATCTTTGCCAGCAAGTCAGCTACAACCGTTTCATCACCACCGGCCTTGACCTCCTCCTCAGA
GACTTCTCCTTCTGCCAAGTTCAGCTCAATAAGCGCATAGAATGCAAGGTGCGC

Alignment

ORF - retro_tsyr_1737 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.61 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MASLLCCGPKLAACGIVL-SAWGVIMLIMLGIFFNVHSAVLIEDVPLTEKDFENGPQNIYSVYEQVSYNC
          .ASLL.CG.KLAACGI.L.SAWG.I.L.MLGIF.NVHSAVL.EDV...E...E..P........QVSYN.
Retrocopy LASLLSCGRKLAACGITLISAWGAIRLTMLGIFLNVHSAVLVEDVH-RERF*EWPPEHLEHLCQQVSYNR

Parental  FIAASLYLLLGAFSVCQIRLNKRKEYMVR
          FI...L.LLL..FS.CQ..LNKR.E..VR
Retrocopy FITTGLDLLLRDFSFCQVQLNKRIECKVR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1737 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000004064	1 retrocopy	retro_cpor_641,
Dasypus novemcinctus	ENSDNOG00000023883	1 retrocopy	retro_dnov_1548,
Tarsius syrichta	ENSTSYG00000006902	2 retrocopies	retro_tsyr_1104, retro_tsyr_1737 ,