RetrogeneDB ID: retro_tbel_1695

Retrocopy location

• Organism: Treeshrew (Tupaia belangeri)
• Coordinates: GeneScaffold_549:104898..105996(-)
• Located in intron of: ENSTBEG00000014367

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MCM7
• Ensembl ID: ENSTBEG00000014138
• Aliases: None
• Description: minichromosome maintenance complex component 7 [Source:HGNC Symbol;Acc:6950]

Sequence

>retro_tbel_1695
GAACACGTCAGTGTCACTGCTATCTTCTTGTCAGTTTTGCACACTGGGTTCCAATAGGTGGTGCAGGTTTTACTCTTGGA
GACTTATTTAGAAACCCATCAGATTGTGAAGATGAATAAGAGTGAGGATGATGAGTCTGGGGCTGGAGAGCTGACCAGGG
AAGACCTGAGGTAGATTGCAGAAGAGGATTTCTATGAAAAGCTGGCAGCTTCTATCGCCCCAGAGATATATAGGCATGAA
GATATAAGGAAGGCACTGTTGCTCCTGCTAGTGGGAGGTGTGTACTAGTCTCCTCATGGAATGAGAATCAGGGATAACAT
CAACATCTGCCTTATGGGGGATCCTGGTGTGGCCAAGTCTCAGCTCCTGTCTTACATTGATAGCCTGGTCCCCCGCAGGC
AGCACACAAGAGGCCGAGGCTCATCCGGAGTAGGGCTTACAGCAGCTGTGCTGAGAGACTCTGTGACTGGAGAGTTGACC
TTGGAGGGTGGGGCCCTTGTGCTGGCTGACCAGGGCATGTGCTGCATCGATGAGTTTGACAAAATGGCTGAGGCTAACCA
CATAGCCATCCATGAGGTCATGGAGCAGCAAACCATCTCCATCGCCAAGGCAGGCATCCTCACCACACTCAACGCCAGCT
GCTCCATCCTGGCAGCCGCCAACCCTGCCTAAGGATGCTACAACCCTCGTCGGCACCTGGAACAGAACATACAGCTTCCT
ACTGCACTGCTCTCCCGATTTGATCTCCTCTGGCTGATCCAGGACCGACCTGACTGAGACAATGACCTACGGTTGGCCCA
GGACGTCACCTACGTGCACCAGCATAGCCTCCAGCCCCCAGCCCAATTTGAGTCTTTGGACATGAAGCTTATGAGATGTT
ATATAACCATGTGCCGGGAGAAGCAACCCACAGTGCCAGAGTCGCTGGCTGACTATATCACAGCAGCTTATGTGGAAATG
AGGTGAGAGGCTTGGGCTAGTAAGGATACCACCTATACCTCTGCCTAGACCCTGCTGGCTATTCTATGACTTTCAACTGC
ACTGGCACATCTGCGAATGGTGGACACAGTGGAAAAGGAAGATGTGAATGAAGCCATA

Alignment

ORF - retro_tbel_1695 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.16 %
• Parental protein coverage: 50.9 %
• Number of stop codons detected: 8
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DHVSVTGIFLPVLRTGFRQVVQGLLSETYLEAHRIVKMNKSEDDESGAGELSREELRQIAEEDFYEKLAA
          .HVSVT.IFL.VL.TGF..VVQ.LL.ETYLE.H.IVKMNKSEDDESGAGEL.RE.LR.IAEEDFYEKLAA
Retrocopy EHVSVTAIFLSVLHTGFQ*VVQVLLLETYLETHQIVKMNKSEDDESGAGELTREDLR*IAEEDFYEKLAA

Parental  SIAPEIYGHEDVKKALLLLLVGGVDQSPRGMKIRGNINICLMGDPGVAKSQLLSYIDRLAPRSQYTTGRG
          SIAPEIY.HED..KALLLLLVGGV..SP.GM.IR.NINICLMGDPGVAKSQLLSYID.L.PR.Q.T.GRG
Retrocopy SIAPEIYRHEDIRKALLLLLVGGVY*SPHGMRIRDNINICLMGDPGVAKSQLLSYIDSLVPRRQHTRGRG

Parental  SSGVGLTAAVLRDSVTGELTLEGGALVLADQGVCCIDEFDKMAEADRTAIHEVMEQQTISIAKAGILTTL
          SSGVGLTAAVLRDSVTGELTLEGGALVLADQG.CCIDEFDKMAEA...AIHEVMEQQTISIAKAGILTTL
Retrocopy SSGVGLTAAVLRDSVTGELTLEGGALVLADQGMCCIDEFDKMAEANHIAIHEVMEQQTISIAKAGILTTL

Parental  NARCSILAAANPAYGRYNPRRSLEQNIQLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHSRQPP
          NA.CSILAAANPA.G.YNPRR.LEQNIQLP.ALLSRFDLLWLIQDRPD.DNDLRLAQ..TYVHQHS.QPP
Retrocopy NASCSILAAANPA*GCYNPRRHLEQNIQLPTALLSRFDLLWLIQDRPD*DNDLRLAQDVTYVHQHSLQPP

Parental  AQFEPLDMKLMRRYIAMCREKQPTVPESLADYITAAYVEMRREAWASKDATYTSARTLLAILRLSTALAR
          AQFE.LDMKLMR.YI.MCREKQPTVPESLADYITAAYVEMR.EAWASKD.TYTSA.TLLAIL.LSTALA.
Retrocopy AQFESLDMKLMRCYITMCREKQPTVPESLADYITAAYVEMR*EAWASKDTTYTSA*TLLAIL*LSTALAH

Parental  LRMVDTVEKEDVNEAI
          LRMVDTVEKEDVNEAI
Retrocopy LRMVDTVEKEDVNEAI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tupaia belangeri was not studied using RNA-Seq expression data.

ChIP-Seq

Tupaia belangeri was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_tbel_1695 retrocopy.

TSS

Tupaia belangeri was not studied using FANTOM5 data.

Lab

retro_tbel_1695 was not experimentally validated.

Homology

Retrocopy orthology:

Tupaia belangeri does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000010996	1 retrocopy	retro_meug_1233,
Mus musculus	ENSMUSG00000029730	1 retrocopy	retro_mmus_1468,
Tupaia belangeri	ENSTBEG00000014138	1 retrocopy	retro_tbel_1695 ,