RetrogeneDB ID: retro_meug_1233

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold33482:14001..15242(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MCM7
• Ensembl ID: ENSMEUG00000010996
• Aliases: None
• Description: minichromosome maintenance complex component 7 [Source:HGNC Symbol;Acc:6950]

Sequence

>retro_meug_1233
GAGGATGTCTTGGATGTATATATTGAACACCGGCTCATGATGGAGCAACGAAGCCAGGACCCTGGAGCCATCCATAGCCC
TCAGAATCAGTATCCCTCTGAGCTCATGTGGAGATTTGAACTATACTTTCTGAGCCCAAGAAGCAGCAAACCACGGGTGA
TTCGAGAAGTACGTGCTGATGCAATAGGAAAGTTGGTTACTGTGCGTGGGATTGTGACTCGTGTCTCTGAGGTCAAGCCT
AGGATGGTAGTGGCAACATACACCTGTGACCAGTGTGGAGCTGAGACCTATCAGCTGATTCGGTCTCCTGTTTTCATGCC
ACTAATTACGTGCCCAAGCCAAGAGTGTCGGACCAATCGCTCAGGAGGACGGCTCTACTTACAGACACGTGGTTCCAAAG
TCATTAAGTTCCAAGAGTTAAAAATGCAAGAACAGGGTGACCAAGTGCCACTGGGAAACATCCCACGAAGTATCACAGTG
TTGGTAGAAGGAGAGAACACACTGTTGGCCCAGCCAGGTGACCACGTCAGTATCACTGGCATATTCCTGCCAATGCTGCA
TACGGGATTCCGACAGGTGATGCAGGGCCTGCTATCAAAAACTTATTTGGAAGCCCACTGGATTGTGAAGATGAATAAGA
GCGAAGATGATGAAGCTGGGATTGGAGAGCTGAGCAAAGAGGAGATGAGACAGATTGCAGAAGATTTCTATGAAAAACTG
GCAGCCTCAATTGCTCCTGAGATATATGGACATGAAGATGTAAAGAAGGCTCTGCTTCTCTTGTTGGTTGGTGGGGTGGA
TCAGTCCCCTCGGGGAATGAAGATCAGAGGAAACATTAATATTTGCTTGATGGGGGATCCTGGTGTGGCCAAGTCTCAAC
TTCTATCTTATATTGATCGTCTGACCCCTCAAAGCCAGTATACAACAGGTCGAGGGTCATCAGGTGTGGGACTAACCACA
GCAGTGCTTCGGGATGCAGTGAGCAGGGAGCTGACCTTGGAGGGAGGTGCGCTGGTACTAGCTGACCAGGGTGTATGCTG
TATTGATGAGTTTGACAAGATGGCAGAGGCTGATCACACAACAATCCATGAAGTGATGGAGCAGCAAACTATTTCTACAG
CAAAAGCAAGCATTCTTACCACACTTAATGCTCCATGCTCCATCTTGGCTGCCTCTAACCCTGCTTATTGACGATATAAT
CCTCGTCGCAGCCTGGAACAGAATGTACAGTTCCTGCTGCT

Alignment

ORF - retro_meug_1233 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.59 %
• Parental protein coverage: 57.64 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KDVLDVYIEHRLMMEQRSQDPGAIRSPQNQYPSELMCRFELYFRSPSSSKPRVIREVRADSIGKLVTVRG
          .DVLDVYIEHRLMMEQRSQDPGAI.SPQNQYPSELM.RFELYF.SP.SSKPRVIREVRAD.IGKLVTVRG
Retrocopy EDVLDVYIEHRLMMEQRSQDPGAIHSPQNQYPSELMWRFELYFLSPRSSKPRVIREVRADAIGKLVTVRG

Parental  IVTRISEVKHRMVVATYTCDQCGAETYQPIRSPVFMPLIMCPSQECQTNRSGGRLYLQTRGSKFIKFQEL
          IVTR.SEVK.RMVVATYTCDQCGAETYQ.IRSPVFMPLI.CPSQEC.TNRSGGRLYLQTRGSK.IKFQEL
Retrocopy IVTRVSEVKPRMVVATYTCDQCGAETYQLIRSPVFMPLITCPSQECRTNRSGGRLYLQTRGSKVIKFQEL

Parental  KMQEHSDQVPVGNIPRSITVLVEGENTRLAQPGDHVSITGIFLPMLRTGFRQVVQGLLSETYLEAHRIVK
          KMQE..DQVP.GNIPRSITVLVEGENT.LAQPGDHVSITGIFLPML.TGFRQV.QGLLS.TYLEAH.IVK
Retrocopy KMQEQGDQVPLGNIPRSITVLVEGENTLLAQPGDHVSITGIFLPMLHTGFRQVMQGLLSKTYLEAHWIVK

Parental  MNKSEDDEAGIGELSKEELRQIAEEDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDQSPRGMKIRGNI
          MNKSEDDEAGIGELSKEE.RQIA.EDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDQSPRGMKIRGNI
Retrocopy MNKSEDDEAGIGELSKEEMRQIA-EDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDQSPRGMKIRGNI

Parental  NICLMGDPGVAKSQLLSYIDRLAPRSQYTTGRGSSGVGLTAAVLRDAVSGELTLEGGALVLADQGVCCID
          NICLMGDPGVAKSQLLSYIDRL.P.SQYTTGRGSSGVGLT.AVLRDAVS.ELTLEGGALVLADQGVCCID
Retrocopy NICLMGDPGVAKSQLLSYIDRLTPQSQYTTGRGSSGVGLTTAVLRDAVSRELTLEGGALVLADQGVCCID

Parental  EFDKMAEADRTAIHEVMEQQTISIAKAGILTTLNARCSILAAANPAYGRYNPRRSLEQNVQ-LPAA
          EFDKMAEAD.T.IHEVMEQQTIS.AKA.ILTTLNA.CSILAA.NPAY.RYNPRRSLEQNVQ..PAA
Retrocopy EFDKMAEADHTTIHEVMEQQTISTAKASILTTLNAPCSILAASNPAY*RYNPRRSLEQNVQ<VPAA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1233 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1233 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000010996	1 retrocopy	retro_meug_1233 ,
Mus musculus	ENSMUSG00000029730	1 retrocopy	retro_mmus_1468,
Tupaia belangeri	ENSTBEG00000014138	1 retrocopy	retro_tbel_1695,