RetrogeneDB ID:

retro_slyc_24

Retrocopy
location
Organism:Tomato (Solanum lycopersicum)
Coordinates:8:56488963..56489905(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:Solyc08g067450.1
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:Solyc08g005470.2
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_slyc_24
ATGGAAAGGTACTTGATAGTTAAGGAAGTTGGTAATGGTTCATTTGGGAATGTATGGAGAGCTTTGAATAAACAGAGTGG
TGAAGTGGTTGCGATTAAGAAAATGAAGAAGAAGTATTATTCATGGAAAGAATGCATCAACTTGAGAGAAGTCAAGTCAT
TGAGGAGAATGAACCATCCAAATGTAGTTAAGCTCAAGGAAGTGATTAACGAGAATGACATATTATACTTTGTGTTTGAA
TACATGGAGTGCAACTTATATAATCTTATGGAGAATCGGCCTCATTTTTTCGTAGAGTCACAAGTGAGAATTTGGTGCTT
CCAAATATTTCAAGGTCTTGCATCCATCCATCAACAAGGATACTTTCATCGCGATCTTAAGCCAGAGAACTTGTTGGTTT
CAAAAGATTATATGATAAAAATTGCTGATTTTGGTTCTGCTAGGGAGATCAATTCTCAGCCTCCATATACTGAATATGTC
TCAACACGCTGGTATCGTGCCCCTGAAGTTCTTTTAGGATCACCAATATATGGTCCTGCTGTTGATATGTGGGCAATGGG
TGCAATAATGGCGGAGTTATTAACTCTTCGTCCTCTATTCCCTGGTTTGGGTGAAGCAGATGAGATTTACAGAATATGCA
GTGTTATAGGTACTCCATCAAAGAGTGAATGGGCTCATGGACATGAACTTGCTGCTGCTATCAACTACCAGTTTCCACAG
ATACGTGGTGTAACTCTGTCTAACGTACTCCCATATGTTAGCGAGGATGCAATTAATCTAATAACTTGGCTTTGTTCGTG
GGATCCTTGCAAGAGGCCAACAGCGGTGGAGGTTCTTCAGCACAATTTCTTCCAGAGTTGCTTTTATGTACCTCCATCAT
TATGCTCTAACACTGCTGCTGCTCCTCCATCTGTTGGAATTACGGCAAATCCCTTAGTATAA

ORF - retro_slyc_24 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 84.79 %
Parental protein coverage: 68.29 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMERYKVIKEVGNGTFGSVWRALNKQSGEVVAIKKMKKKYYSWEECINLREVKSLRKMSHPNIVKLKEVIR
MERY...KEVGNG.FG.VWRALNKQSGEVVAIKKMKKKYYSW.ECINLREVKSLR.M.HPN.VKLKEVI.
RetrocopyMERYLIVKEVGNGSFGNVWRALNKQSGEVVAIKKMKKKYYSWKECINLREVKSLRRMNHPNVVKLKEVIN
ParentalENDILYFVFEYMECNLYHLMKDRPKLFLESEVRNWCFQIFQGLANMHQRGYFHRDLKPENLLVSKD-TIK
ENDILYFVFEYMECNLY.LM..RP..F.ES.VR.WCFQIFQGLA..HQ.GYFHRDLKPENLLVSKD..IK
RetrocopyENDILYFVFEYMECNLYNLMENRPHFFVESQVRIWCFQIFQGLASIHQQGYFHRDLKPENLLVSKDYMIK
ParentalIADFGLAREINSKPPYTEYVSTRWYRAPEVLLQSPIYGPAVDMWAMGAIMAELLTLRPLFPGSSEADEIY
IADFG.AREINS.PPYTEYVSTRWYRAPEVLL.SPIYGPAVDMWAMGAIMAELLTLRPLFPG..EADEIY
RetrocopyIADFGSAREINSQPPYTEYVSTRWYRAPEVLLGSPIYGPAVDMWAMGAIMAELLTLRPLFPGLGEADEIY