RetrogeneDB ID: retro_sara_503

Retrocopy location

• Organism: Shrew (Sorex araneus)
• Coordinates: scaffold_228817:51781..52588(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZNF512
• Ensembl ID: ENSSARG00000002246
• Aliases: None
• Description: zinc finger protein 512 [Source:HGNC Symbol;Acc:29380]

Sequence

>retro_sara_503
TTTAAAGAGATCGTGAAAAAAGGCAGTGTCTCCCGTCCTACCGGCCAGACGATAGGGAGGAAGACCCTCAAGGGCCTTGA
GAAGCATATGCAAAGCTGCAAACCGTAAATGCTCATTTTCCATCACCGAGGGAAAGAGCTTCGCGCACTGGCAGGGATGA
AGTCCCGTGTCATGACAAAACCAAAACTGCCCATTTAGAGGGCCTGGAGGGGACGCATTCGAAGAACCGAGGGAGAGGGA
GAGGCTCCTCAGCGTTCTCAAGAGACTGGGGAAACTCAGGTGCACACGTGAGAGCTGCTCTACTAGCGTTAGCAGCATCA
CGGCCTATCTGAACCATGTCCAAAAATGTGGAAAAGAGGCTGCCCAGCTGGAGAAGCTGACCCTGACGGGTCACCATTGT
GGCAAGGTGTATTGGTCAAGGCTGGACTTGCATATCATCTGAGGTCAGAGCACGGGCCTGTCTTCTTTCTAGACACAGGG
CAGCCAGAGGGCTTAACGGACAGAAGCCTGCAGTTTCCGAGTGGGGGCCAGGTTTTAAGGCATTCTGTCAAGTTAGCTCA
GTTTCGTCCACAAGAGCTGGCCTCTGCTGTGCTGGACAAGAACTGTCCTAATAGGAATCTGCTCTGGGATCTTGTATCTG
ATAATCGAAAGTTAAAATAGGCACATCTTGGACTATCCACCTTCAGTGAAGAAGCGATTGACAAGTAAAAGTTAGAGATC
AAGAAGTGCCATCACATTCACTGTCCCAAACAGGGTTGTGAGGTTGTCTATAGTAGTATGCCTGGCCTTAAAGCTCATCT
GGGCTCT

Alignment

ORF - retro_sara_503 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.59 %
• Parental protein coverage: 52.94 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  YLEIVEKGSVSCPTCQTVGRKTIEGLKKHMENCKQEMLTCHHCGKQLRSLAGMKYHVMANHNSLPILKA-
          ..EIV.KGSVS.PT.QT.GRKT..GL.KHM..CK..ML..HH.GK.LR.LAGMK..VM.....LPI..A.
Retrocopy FKEIVKKGSVSRPTGQTIGRKTLKGLEKHMQSCKP*MLIFHHRGKELRALAGMKSRVMTKPK-LPI*RA>

Parental  GGDAFNEPSERERLRTVLKRLGKLRCTRESCSSSFTSIMGYLYHVKKCGKEAAELEKLTLTCHHCGKVYR
          GGDAF.EP.ERERL..VLKRLGKLRCTRESCS.S..SI..YL.HV.KCGKEAA.LEKLTLT.HHCGKVY.
Retrocopy GGDAFEEPRERERLLSVLKRLGKLRCTRESCSTSVSSITAYLNHVQKCGKEAAQLEKLTLTGHHCGKVYW

Parental  S-KAGLAYHLRSEHGPIFFLDSGQPEGLTDMSMQSPSGGRVRRRSAKIAEFHLQELASAELAKEWPKRKL
          S.KAGLAYHLRSEHGP.FFLD.GQPEGLTD.S.Q.PSGG.V.R.S.K.A.F..QELASA.L.K..P.R.L
Retrocopy S<KAGLAYHLRSEHGPVFFLDTGQPEGLTDRSLQFPSGGQVLRHSVKLAQFRPQELASAVLDKNCPNRNL

Parental  LRDLVPDDRKLKYARPGLPTFSEEVLHKWKLEIKKYHHIRCPNQGCEAVYGSISGLKAHLGS
          L.DLV.D.RKLK.A..GL.TFSEE...K.KLEIKK.HHI.CP.QGCE.VY.S..GLKAHLGS
Retrocopy LWDLVSDNRKLK*AHLGLSTFSEEAIDK*KLEIKKCHHIHCPKQGCEVVYSSMPGLKAHLGS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sorex araneus was not studied using RNA-Seq expression data.

ChIP-Seq

Sorex araneus was not studied using ChIP-Seq data.

EST

Sorex araneus was not studied using EST data.

TSS

Sorex araneus was not studied using FANTOM5 data.

Lab

retro_sara_503 was not experimentally validated.

Homology

Retrocopy orthology:

Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000003902	1 retrocopy	retro_btau_1331,
Echinops telfairi	ENSETEG00000015916	1 retrocopy	retro_etel_913,
Sorex araneus	ENSSARG00000002246	1 retrocopy	retro_sara_503 ,
Sarcophilus harrisii	ENSSHAG00000014564	1 retrocopy	retro_shar_808,
Tarsius syrichta	ENSTSYG00000006511	1 retrocopy	retro_tsyr_1021,