RetrogeneDB ID: retro_etel_913

Retrocopy location

• Organism: Lesser hedgehog tenrec (Echinops telfairi)
• Coordinates: scaffold_183960:6766..7719(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSETEG00000011500
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ZNF512
• Ensembl ID: ENSETEG00000015916
• Aliases: None
• Description: zinc finger protein 512 [Source:HGNC Symbol;Acc:29380]

Sequence

>retro_etel_913
ACTCGAGGACGCACATCCTTTAAGCAGCAGAAGAACCCCAGGAAGAGCATTGGGACGAAGAATAGCAAGAACCAGTGCTC
CATAAAGGATAATAGTTTCCAGTACACTATCCCTCATGATGACTCCTTCAGTGGTTCATCATCTGCCTCTTCATGTGAAG
CAATCAATGATTTTCCGACATCCTTCTGAAAATCTGCCACCTACTTGAAGAAGATTAAAAGCACCAAACCTCCTGCTGCT
TCATCAACCAAAGGAAAAAGGAAACCAAGGCAGGAAGAAGATGAAGATGAAGATTATAGACAATTCCCTCAGAAGAAGCA
TAACCTTTAAGGGAGGAAACAACGGCCTAAACCCCAGCCAAGCCCCAAGCCCCAGCCTCATCGTGTTTGGAAGGAACTGC
CAACTTATGCTGTAGGCAGTGTGGAGGAGCAATGGTACTTAGAAATCATGGATAAGGGCAGTGTCTCCTGCAATACCTGC
CAGTCAGTGGGGAGAAAAACCATAGAAGGTTTAAAGAAACGATGGAAAACTGCAGACAGGAACTGCTTACTTGTCACCAT
TGTGGGAAACAGCTGTGTTCTATGACAGGGATGAAGTACCACGTCATGGCAAATCATAACAGTTTGCCGATTTTGAAGGC
TGGCGGTGAACTAGACGAGCCAAGTGAGAGAGAGCGCCTCCGAACAGTTCTGAAGAGGCTGGGGAAGATCAGGTGCATGT
GTGAGAGTTGCTCTAGTAGCTTCATCAGCATCATGGGCTATATGTACCACTTCAGAAAATGTAGCAAAGCGGCATCACAG
CTGGAAAAGATGACCCTGAAATGTCAGCACTGTGCAAAGCCATATAGATCGAAGGCTGGGCTTGCATATCACCTGAGGTC
AGAGCACGGGCCTATCTCCTTCTTAGAGTCAGGACAGTCCAAATGCTTAAAGGATGTGAACCTGGTGTCAGAG

Alignment

ORF - retro_etel_913 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.1 %
• Parental protein coverage: 58.14 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  TPGRTSFKPQKSPRKSVGTKNSKNQCSIKDNSFQYTIPHDDSLSASSSASSCEAINDFPTSFRKSATY-K
          T.GRTSFK.QK.PRKS.GTKNSKNQCSIKDNSFQYTIPHDDS.S.SSSASSCEAINDFPTSF.KSATY.K
Retrocopy TRGRTSFKQQKNPRKSIGTKNSKNQCSIKDNSFQYTIPHDDSFSGSSSASSCEAINDFPTSF*KSATYLK

Parental  KIRRIKPPAASRVEGSGGASTKGKKKPRQEEDEDEDYRQFPQKKHNLYGRKQRPKPQPSPKPQPRRVRKE
          KI...KPPAAS...G......K........ED....YRQFPQKKHNL.GRKQRPKPQPSPKPQP.RV.KE
Retrocopy KIKSTKPPAASSTKG----KRKPRQEEDEDED----YRQFPQKKHNL*GRKQRPKPQPSPKPQPHRVWKE

Parental  PPTYAAGIVEEQWYLEIMDKGSVSCPTCQSVGRKTIEGLKKH-MENCRQELFTCHHCGKQLRSMAGMKYH
          .PTYA.G.VEEQWYLEIMDKGSVSC.TCQSVGRKTIEGLKK..MENCRQEL.TCHHCGKQL.SM.GMKYH
Retrocopy LPTYAVGSVEEQWYLEIMDKGSVSCNTCQSVGRKTIEGLKKR<MENCRQELLTCHHCGKQLCSMTGMKYH

Parental  VMANHNSLPILKAGGELDEPSERERLRTVLKRLGKIRCMRESCSSSFTSIMGYMYHVRKCGKAASELEKM
          VMANHNSLPILKAGGELDEPSERERLRTVLKRLGKIRCM.ESCSSSF.SIMGYMYH.RKC.KAAS.LEKM
Retrocopy VMANHNSLPILKAGGELDEPSERERLRTVLKRLGKIRCMCESCSSSFISIMGYMYHFRKCSKAASQLEKM

Parental  TLKCQHCAKPYRSKAGLAYHLRSEHGPISFLESGQSECLKDVNLESK
          TLKCQHCAKPYRSKAGLAYHLRSEHGPISFLESGQS.CLKDVNL.S.
Retrocopy TLKCQHCAKPYRSKAGLAYHLRSEHGPISFLESGQSKCLKDVNLVSE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Echinops telfairi was not studied using RNA-Seq expression data.

ChIP-Seq

Echinops telfairi was not studied using ChIP-Seq data.

EST

Echinops telfairi was not studied using EST data.

TSS

Echinops telfairi was not studied using FANTOM5 data.

Lab

retro_etel_913 was not experimentally validated.

Homology

Retrocopy orthology:

Echinops telfairi does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000003902	1 retrocopy	retro_btau_1331,
Echinops telfairi	ENSETEG00000015916	1 retrocopy	retro_etel_913 ,
Sorex araneus	ENSSARG00000002246	1 retrocopy	retro_sara_503,
Sarcophilus harrisii	ENSSHAG00000014564	1 retrocopy	retro_shar_808,
Tarsius syrichta	ENSTSYG00000006511	1 retrocopy	retro_tsyr_1021,