RetrogeneDB ID: retro_sara_322

Retrocopy location

• Organism: Shrew (Sorex araneus)
• Coordinates: scaffold_162523:1802..1999(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ISCU
• Ensembl ID: ENSSARG00000012942
• Aliases: None
• Description: iron-sulfur cluster scaffold homolog (E. coli) [Source:HGNC Symbol;Acc:29882]

Sequence

>retro_sara_322
TCTACGCTTGCCTGAAGCTTACTGGTCATCAGGGGGATGGAAGGGAAGAGAGAGGAAGAAGCCTTGACCATCCTCAGCAC
TGATATCATTAAGGAGCTCTACCTGCTTTCCAAGAAATTACATTGCTCTGAGCTAGGTGCAGATGCTATGAAGGGCACCT
GATTGATTACAAGAACCAAGAAAGCAGAAGTGGAGAA

Alignment

ORF - retro_sara_322 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 52.94 %
• Parental protein coverage: 73.63 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAA-LADYKLKQEPKKGE
          S..A.S.L......GK..EEALTI..TDI.KEL.L...KLHCS.L..DA.K...L.DYK..QE...GE
Retrocopy STLA*SLLVIRGMEGKREEEALTILSTDIIKELYLLSKKLHCSELGADAMKGT<LIDYK-NQESRSGE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sorex araneus was not studied using RNA-Seq expression data.

ChIP-Seq

Sorex araneus was not studied using ChIP-Seq data.

EST

Sorex araneus was not studied using EST data.

TSS

Sorex araneus was not studied using FANTOM5 data.

Lab

retro_sara_322 was not experimentally validated.

Homology

Retrocopy orthology:

Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 6 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000011773	2 retrocopies	retro_chof_229, retro_chof_2698,
Callithrix jacchus	ENSCJAG00000015374	2 retrocopies	retro_cjac_1584, retro_cjac_1644,
Myotis lucifugus	ENSMLUG00000007942	3 retrocopies	retro_mluc_1106, retro_mluc_1939, retro_mluc_2342,
Monodelphis domestica	ENSMODG00000002828	1 retrocopy	retro_mdom_1924,
Sorex araneus	ENSSARG00000012942	1 retrocopy	retro_sara_322 ,
Xenopus tropicalis	ENSXETG00000027428	1 retrocopy	retro_xtro_66,