Parental gene:

ENSCJAG00000015374

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:98640511..98648362(+)


>ENSCJAG00000015374
ATGGCGGCGGCTGGGGCTGGCCGTCTGAGACGGGCGGCGTCGGCCCTGCTGCTCCGGAGCCCCCGCCTGCCTGCTCGGGA
GCTGTCAGCCCCGGCCCGGCTCTATCACAAGAAGGTTGTTGATCATTATGAAAATCCTAGAAACGTGGGGTCCCTTGACA
AGACATCTAAAAATGTTGGAACTGGATTGGTCGGGGCTCCAGCATGTGGTGATGTAATGAAATTACAGATTCAAGTGGAT
GAAAAGGGGAAGATCGTGGATGCTAGGTTTAAAACATTTGGCTGTGGTTCTGCAATTGCCTCCAGCTCATTAGCCACTGA
ATGGGTGAAAGGAAAGACGGTGGAGGAAGCCTTGACTATCAAAAATACAGATATCGCCAAGGAGCTCTGCCTTCCTCCTG
TGAAACTGCACTGCTCCAGGAAGGAAGGAATGAGAAACAGCCTTAACGCATCAATGGAGGTTTACTAA

Library Parental gene expression (RPM)
SRP051959_spleen 20 .23 RPM
SRP051959_skeletal_muscle 37 .26 RPM
SRP051959_lymph_node 13 .81 RPM
SRP051959_lung 22 .25 RPM
SRP051959_liver 29 .83 RPM
SRP051959_kidney 38 .71 RPM
SRP051959_heart 26 .35 RPM
SRP051959_colon 13 .51 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016405 possible_ortholog 3 retrogenes
retro_amel_1338, retro_amel_755, retro_amel_902,
Bos taurus ENSBTAG00000011787 possible_ortholog 3 retrogenes
retro_btau_378, retro_btau_646, retro_btau_648,
Canis familiaris ENSCAFG00000011324 possible_ortholog 4 retrogenes
retro_cfam_388, retro_cfam_390, retro_cfam_599, retro_cfam_686,
Choloepus hoffmanni ENSCHOG00000011773 possible_ortholog 2 retrogenes
retro_chof_229, retro_chof_2698,
Cavia porcellus ENSCPOG00000010986 possible_ortholog 1 retrogene
retro_cpor_1201,
Equus caballus ENSECAG00000019879 possible_ortholog 3 retrogenes
retro_ecab_359, retro_ecab_753, retro_ecab_849,
Felis catus ENSFCAG00000014044 possible_ortholog 2 retrogenes
retro_fcat_1769, retro_fcat_471,
Homo sapiens ENSG00000136003 possible_ortholog 2 retrogenes
retro_hsap_3596, retro_hsap_468,
Gorilla gorilla ENSGGOG00000011579 possible_ortholog 2 retrogenes
retro_ggor_2426, retro_ggor_446,
Loxodonta africana ENSLAFG00000007170 possible_ortholog 2 retrogenes
retro_lafr_609, retro_lafr_728,
Microcebus murinus ENSMICG00000013067 possible_ortholog 4 retrogenes
retro_mmur_1359, retro_mmur_558, retro_mmur_636, retro_mmur_81,
Myotis lucifugus ENSMLUG00000007942 possible_ortholog 3 retrogenes
retro_mluc_1106, retro_mluc_1939, retro_mluc_2342,
Macaca mulatta ENSMMUG00000017126 possible_ortholog 1 retrogene
retro_mmul_572,
Monodelphis domestica ENSMODG00000002828 ortholog_one2one 1 retrogene
retro_mdom_1924,
Mus musculus ENSMUSG00000025825 possible_ortholog 2 retrogenes
retro_mmus_1806, retro_mmus_3317,
Nomascus leucogenys ENSNLEG00000006797 possible_ortholog 2 retrogenes
retro_nleu_299, retro_nleu_884,
Oryctolagus cuniculus ENSOCUG00000016305 possible_ortholog 1 retrogene
retro_ocun_637,
Otolemur garnettii ENSOGAG00000000936 ortholog_one2one 4 retrogenes
retro_ogar_1082, retro_ogar_1802, retro_ogar_425, retro_ogar_847,
Procavia capensis ENSPCAG00000007604 possible_ortholog 2 retrogenes
retro_pcap_257, retro_pcap_86,
Pongo abelii ENSPPYG00000004920 possible_ortholog 3 retrogenes
retro_pabe_1753, retro_pabe_266, retro_pabe_2956,
Sorex araneus ENSSARG00000012942 possible_ortholog 1 retrogene
retro_sara_322,
Tupaia belangeri ENSTBEG00000001086 possible_ortholog 3 retrogenes
retro_tbel_1987, retro_tbel_2588, retro_tbel_545,
Tarsius syrichta ENSTSYG00000013952 possible_ortholog 2 retrogenes
retro_tsyr_1484, retro_tsyr_98,
Tursiops truncatus ENSTTRG00000004036 possible_ortholog 1 retrogene
retro_ttru_1720,
Xenopus tropicalis ENSXETG00000027428 ortholog_one2many 1 retrogene
retro_xtro_66,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1584 91.36 56.34
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cjac_1644 64.21 66.20
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCJAG00000015374 retrocopies