RetrogeneDB ID: retro_ogar_391

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873520.1:38640330..38641396(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000024774
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000016975
• Aliases: None
• Description: None

Sequence

>retro_ogar_391
AAGAAGCTAGTCAAAGAGAGTTAGAGTGAGGACAAGGGCAGTGATAGTGACAGTGAAGGGGATAGTCCAGAGAAAAAGAA
ACCGCAAGAACAACTGATGGGTACTGTTGTGATAGAGAAGCCCAATATATTGTGGAGTGACGTGGCTGGGCTGGAGGGAG
CCAAGAAGGCCCTCAAAGAAGCTGTCATTTTGCCAATTAAATTCCCACACTTGTTCACAGGTAAGCGCACCCCTTGGCAA
AGGATACTGCTCTTTGGACCACCTGGCACAGAGAAATCCTACTTGGCCAAAGCCGTGGCAACAGAGGCCAACAACTCCAC
CGTCTTCTCTGTGTCCTTCTCAGATTTGACGTCCAAGTGGTTGGGGGACAGTGAGAAGCTAGTCAAGAACCTGTGTGAGC
TGGCCAGGCAGCACAAGCCCTCTATCATCTTCATTGATGAGGTGGATGCCCTCTGTGGATCCCGAAATGAAAACGAGAGT
GAGGCTGCCCGAAGGATCAAACGGAGTTCCTGGTCCAAATGCAGGGGGTGGGGAATAACAATGATGGGACTCTGGTTCTT
GGTGCCACAAACATCCCTTGGGGGTTGGATTCAGCAATTAGGGGGAGGTTTGAAAATAAAATTTACATCCCTTTGCCAGA
GGAAGCTGCCCATGCCCAGATGCTCTGGTTGCATCTGGGAGCATGCCCCACAGCCTCACAGATGCTAACATCCAAGAGCT
GGCCCACAAAACAGAAAGCTACTCGGGCGCAGACCTTAACATCATCATGCGGGACTCCCTCATGCAGCCTGTACAGAAAG
TACAGTTGGCAATACACTTCAAAAAGGTCTCTGGTCCTTCCCGCACCAACCCCAGCATTATGATTGATGACCTCCTTACC
CTATGCTCACCAGGGAACCCAGGGGCCATAAAGATGACTTGGATGGATGTCCCTGGTGACGAACTCTTAGAGCCTGTGGT
TTGCATGTCGGACATGCTTTGGTCTTTGGCCACTACCCAGCCCACAGTGAATGCAGATGACCTCCTGGAAGTGAAGAAAT
TCTCAGAGGACTTTGGACAAGAGAGT

Alignment

ORF - retro_ogar_391 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 87.99 %
• Parental protein coverage: 81.46 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  KKPVKESQSEGKGSDSDSEGDNPEKKKLQEQLMGAVVMEKPNIRWSDVAGLEGAKEALKEAVILPIKFPH
          KK.VKES.SE.KGSDSDSEGD.PEKKK.QEQLMG.VV.EKPNI.WSDVAGLEGAK.ALKEAVILPIKFPH
Retrocopy KKLVKES*SEDKGSDSDSEGDSPEKKKPQEQLMGTVVIEKPNILWSDVAGLEGAKKALKEAVILPIKFPH

Parental  LFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLMSKWLGESEKLVKNLFELARQHKP
          LFTGKRTPW..ILLFGPPGT.KSYLAKAVATEANNST.FSVS.SDL.SKWLG.SEKLVKNL.ELARQHKP
Retrocopy LFTGKRTPWQRILLFGPPGTEKSYLAKAVATEANNSTVFSVSFSDLTSKWLGDSEKLVKNLCELARQHKP

Parental  SIIFIDEVDSLCGSRNENESEAARRIK-TEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIY
          SIIFIDEVD.LCGSRNENESEAARRIK.TEFLVQMQGVGNNNDGTLVLGATNIPW.LDSAIR.RFE..IY
Retrocopy SIIFIDEVDALCGSRNENESEAARRIK<TEFLVQMQGVGNNNDGTLVLGATNIPWGLDSAIRGRFENKIY

Parental  IPLPEEAARAQMFRLHL-GSTPHSLTDANIQELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVS
          IPLPEEAA.AQM..LHL.GS.PHSLTDANIQELA.KTE.YSGAD..II.RDSLMQPV.KVQ.A.HFKKVS
Retrocopy IPLPEEAAHAQMLWLHL<GSMPHSLTDANIQELAHKTESYSGADLNIIMRDSLMQPVQKVQLAIHFKKVS

Parental  GPSRTNPSIMIDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVCMSDMLRSLATTRPTVNADDLLKVKKF
          GPSRTNPSIMIDDLLT.CSPG.PGAI.MTWMDVPGD.LLEPVVCMSDML.SLATT.PTVNADDLL.VKKF
Retrocopy GPSRTNPSIMIDDLLTLCSPGNPGAIKMTWMDVPGDELLEPVVCMSDMLWSLATTQPTVNADDLLEVKKF

Parental  SEDFGQES
          SEDFGQES
Retrocopy SEDFGQES

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_391 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000007309	1 retrocopy	retro_meug_1360,
Myotis lucifugus	ENSMLUG00000006550	2 retrocopies	retro_mluc_2432, retro_mluc_2513,
Mus musculus	ENSMUSG00000031913	1 retrocopy	retro_mmus_1038,
Otolemur garnettii	ENSOGAG00000016975	1 retrocopy	retro_ogar_391 ,
Tarsius syrichta	ENSTSYG00000012535	1 retrocopy	retro_tsyr_1246,