RetrogeneDB ID: retro_ogar_337

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873520.1:32423260..32423531(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000030942
• Aliases: None
• Description: None

Sequence

>retro_ogar_337
AGGCAGCAGGAGCTGGCCCCCAAGGCCACCATTCAGGCTGCAAAAGTCTGGCAACATGGGTTGACTTTCCACCGCAACTA
GTTCACCCCACTGAAGCTACAGGAGCTGGAGAGCCTTTTCCAGCACACTCAGTACCCCATGGGTCTGTGTGAAAGTATCT
TGGAAGACACCTTGTGTGACTGTCTATAGAGTGCAGGTTTGGTTTAAGAATAGGAGAGCAAGGTGCAAAAGTTGCCAGAA
GGCATTAAGTTTCAGTAATATGCCCCCCCTT

Alignment

ORF - retro_ogar_337 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 56.99 %
• Parental protein coverage: 59.48 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  RQDRRSRRAAARAAKPGNRGPDFHRSKFTPPQLQELENFFQHTQYP-DGSMRKDLARGL-GVTEDRVQVW
          RQ......A...AAK....G..FHR..FTP..LQELE..FQHTQYP..GS..K.L.R.L..VT..RVQVW
Retrocopy RQQELAPKATIQAAKVWQHGLTFHRN*FTPLKLQELESLFQHTQYP<HGSV*KYLGRHL<CVTVYRVQVW

Parental  FKNRRARWRRCQRALSFRNVAPV
          FKNRRAR...CQ.ALSF.N..P.
Retrocopy FKNRRARCKSCQKALSFSNMPPL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_337 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Otolemur garnettii	ENSOGAG00000030871	2 retrocopies	retro_ogar_306, retro_ogar_384,
Otolemur garnettii	ENSOGAG00000030942	1 retrocopy	retro_ogar_337 ,
Ictidomys tridecemlineatus	ENSSTOG00000005297	1 retrocopy	retro_itri_735,