RetrogeneDB ID: retro_ogar_3144

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873728.1:958401..959472(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000009179
• Aliases: None
• Description: None

Sequence

>retro_ogar_3144
ATGGCTAATCAGATGAATGTAACATGGTACAGTTAAAAGAAGAGGAAGAACCAATGGATACTTCCAGTGTAACTCACACG
GAACACTACAAGACACTGACAGAGGCAGGCCTCCCACAGAAGGAGGCAGAAAGACTTGATGAAATATTTCAGATGGGATT
GGTAGCCTATGTTGATCTTGATGAAAGAGCAATTGATGCTCTCAGGGAATTTAATGAAGAAGGAGCTCTGTCTGTACTAC
AACAGTTCAAAGAAAGTGACTTATCACGTGTTCAGAACAAGAGTGCATTTTTATATGGAGTTATGAAGACCTATAGGCAA
AGAGAGGAACAGGGGAGCAAGGTGCAGGAGTCCACAAAAGGACCTGATGAAGCAGAGATCAAGGCGTTGCTTGAGAGGAC
TGGTTCTACTCTGGATGTAACCACAGGACAGAGGAAGTACAGTGATCCTCCACCAGACAGTGCATACTCTGGCGTACAAC
CTGGTATTGGAACAGAGTTCTTTTTAGGTAAAATACCAACAGACTTATATTAGGATGAGTTGTTACCCCTTTTTGAGAAG
GCCAGTCCCATTTGGGATCTTTGTCTTATGATAGATCCACTGTCTGGTCAGAACAGAGGATATGCATTCATCACCTTGGT
GGAAAGGAAGCTGCACAGGAAGCTGTTAAACTGTGTGACAGCTGTGAAATTTGTCCTGGTAAACACCTTGGAGTATGCAT
TTCTGTGGCAAACAGCAGACTTTCTGTTGGACCCATTCCAAAGAATAAAACTAAGAAAACATTCTGGAAGAATTCAGTAA
AGTCACAGAGGGTTTGGGAGACATTGTTCTCTATCATCAACCTGATGACCAAAAGGAGAATCAGGGGTTCTGCTTCCTTG
AATATGAGGATCACAAGTCAGCAGCATAAGCCAGACGCCGGCTGATGAGTAGAAAAATAAAAGTATGGGGAAATGTAGTT
ACAATTGAATGGGCTGACCCCATGGAAGAACCAGATCCAGGAGGAATGGCTACAGTGAAAGTTTTATTTGTGAGAAAGTT
GGCTACTACAGTGACAGAAAACTTGAATGAG

Alignment

ORF - retro_ogar_3144 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 86.15 %
• Parental protein coverage: 56.56 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MANQVNG-NAVQLKEEEEPMDTSSVTHTEHYKTLIEAGLPQKVAERLDEIFQTGLVAYVDLDERAIDALR
          MANQ.N..N.VQLKEEEEPMDTSSVTHTEHYKTL.EAGLPQK.AERLDEIFQ.GLVAYVDLDERAIDALR
Retrocopy MANQMNV<NMVQLKEEEEPMDTSSVTHTEHYKTLTEAGLPQKEAERLDEIFQMGLVAYVDLDERAIDALR

Parental  EFNEEGALSVLQQFKESDLSHVQNKSAFLCGVMKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLD
          EFNEEGALSVLQQFKESDLS.VQNKSAFL.GVMKTYRQRE.QGSKVQESTKGPDEA.IKALLERTG.TLD
Retrocopy EFNEEGALSVLQQFKESDLSRVQNKSAFLYGVMKTYRQREEQGSKVQESTKGPDEAEIKALLERTGSTLD

Parental  VTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYA
          VTTGQRKY..PPPDS.YSGVQPGIGTE.F.GKIP.DLY.DEL.PLFEKA.PIWDL.LM.DPLSGQNRGYA
Retrocopy VTTGQRKYSDPPPDSAYSGVQPGIGTEFFLGKIPTDLY*DELLPLFEKASPIWDLCLMIDPLSGQNRGYA

Parental  FITFC-GKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTK-ENILEEFSKVTEGLVDVI
          FIT...GKEAAQEAVKLCDS.EI.PGKHLGVCISVAN.RL.VG.IPKNKTK.ENILEEFSKVTEGL.D..
Retrocopy FITLV<GKEAAQEAVKLCDSCEICPGKHLGVCISVANSRLSVGPIPKNKTK<ENILEEFSKVTEGLGDIV

Parental  LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRN
          LYHQPDD.K.N.GFCFLEYEDHKSAA.ARRRLMS.K.KVWGNVVT.EWADP.EEPDP..MA.VKVLFVR.
Retrocopy LYHQPDDQKENQGFCFLEYEDHKSAA*ARRRLMSRKIKVWGNVVTIEWADPMEEPDPGGMATVKVLFVRK

Parental  LATTVTEEILE
          LATTVTE...E
Retrocopy LATTVTENLNE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_3144 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000125944	1 retrocopy	retro_hsap_651,
Gorilla gorilla	ENSGGOG00000013250	1 retrocopy	retro_ggor_568,
Macaca mulatta	ENSMMUG00000010970	1 retrocopy	retro_mmul_2433,
Monodelphis domestica	ENSMODG00000016144	1 retrocopy	retro_mdom_240,
Mus musculus	ENSMUSG00000066037	1 retrocopy	retro_mmus_458,
Otolemur garnettii	ENSOGAG00000009179	1 retrocopy	retro_ogar_3144 ,
Otolemur garnettii	ENSOGAG00000029367	1 retrocopy	retro_ogar_273,
Procavia capensis	ENSPCAG00000010462	1 retrocopy	retro_pcap_88,
Pan troglodytes	ENSPTRG00000000324	1 retrocopy	retro_ptro_474,
Tupaia belangeri	ENSTBEG00000002251	1 retrocopy	retro_tbel_4256,