RetrogeneDB ID: retro_ogar_273

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873672.1:583295..585059(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000025193
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000029367
• Aliases: None
• Description: None

Sequence

>retro_ogar_273
ATGACCGCAGAGGATTCCACTGTAGCCATGAGCAGCGACTCAGCCGCTATGTCCTCGGCCAAGGTGCCGGAGGGCATGGC
GGACGCACCCAACGAGGAGGCGCTGCTGGCGCTGACGGAGCGCACTGGCTACAGCTTAGTGCAGGAGAATGGGCAGCGCA
AGTATGGCGGCCCGCCGCCGGGCTGGGACGGCCCCCACCCGGAGCGCGGATGCGAAGTCTTCGTGGGCAAGATCCCGCGC
GACGTGTATGAGGATGAGCTGGTGCCGGTGTTCGAGATGGTGGGCCGAATCTATGAGCTGCGCCTCATGATGGACTTCGA
CGGCAAGAACCGCGGCTACGCCTTCGTCATGTACTGCCACAAGCAGGATGCCAAGCGCGCCGTGCGCGAGCTCAACGATT
ACGAGATCCGCCCGGGCCGCCTGCTCGGCGTATGCTGCAGCGTGGACAACTGTCGCCTCTTCCTCGGCGGCATCCCCAAG
TTGAAGAAGCGGGAGGAGATCCTGGAGGAGATCACCAAGGTCACTGAGGGCGTGCTGGACGTGATCGTGTATGCCAGCGC
GGCCGACAAGAAGAAGAACCGCGGCTTTGCCTTCGTGGAGTACGAAAGCCACCGCGCGGCCGCCATGGCGCGCCGCAAGC
TCTTGCCCCGCGGCACCCAGCTGTGGGGCCACCACATTGCCGTGGACTGGGCCGAGCCCGAAATCGATGTGGACGAGGAT
GTGATGGAGACCGTCAAGGTCCTCTACGTGCGCAACCTCATGATTGAGACCACCGAGGACACCATAAAGACGAGCTTTGG
CCAGTTTAACCCGGGCTGCGTGGAGCGTGTCAAGAAGATCCGTGACTACGCCTTCGTGCACTTCACCAGCCGCGAGGACG
CTGTGCACGCCATGAACAGCCTCAACGGCACCGAGCTGGAGGGCTCGTGCCTGGAGGTCACGCTGGCCAAGCCCGTGGAC
AAGGAGCAGTACTTGCGCTACCAGAAGGCAACCAAGGGCTGCGGCGGGGCTGAGGCGGTGGCGCAGCTGCCCAGCTACGT
GTACTCCTATGACCCCTACACGCTGACCTACTACAGCTACCCCTGCAACGTGCTCATCGGGCCCAACCAGGACTACTTCG
TGAAAGCAGGCAGCGTAAGAGGCCGAGGGCGAGGTGCAGCTGGCAACAGAGCCCCGGGGCCCAGGGGTTCCTACTTCGGG
GGATATTCTGCTGGCCGTGGCGTGTATAGCCGATATCATGAAGAAAAAGGAAACCAGCAAGAACAAGGATATGAACTTGT
GCCGAATTTGGAAATCTCTGCCGTTAATCCAGTTGCCATGAAACCTGGTACAGTGGTCATCCCTGCCATCGGGGCCCAGT
ATCCCATGTACCAAGCAGCTCCAGCACCTAAAATGATTGAAGATGGCAAAATTCACACGATGGAGCAGGTTATCAGCCCT
GTTGCTGTGCAGCCAGACCAAGCCAGTGCCGCTGCTGCCACTGCAGCCACCGCCGTTATTCCTGCTGTCTCGACGCCGCC
ACCCTTCCAGGGCCGCCCGATAACCCCAATATACACCGTGGCTCCATTCGTTCAGAGAATTCCCACTACCGGGATCTATG
GGGCCAGTTATGTTCCATTTGCCGCTCCGGCCACCGCCACTATCGCCACACTACAGAATAATGCGGCCGCTGCCATGTAC
GGGGGGTATGCGGACTACATACCTCAGGCCTTCCCAGCTGCTGCCATTCAGGTCCCCATTCCCGACGCGTATCAGACATA
CTGA

Alignment

ORF - retro_ogar_273 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 89. %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MTAEDSTAAMSSDSAAASSAKVPEGVAGAPNEAALLALMERTGYSMVQENGQRKYGGPPPGWEGAHPQRG
          MTAEDST.AMSSDSAA.SSAKVPEG.A.APNE.ALLAL.ERTGYS.VQENGQRKYGGPPPGW.G.HP.RG
Retrocopy MTAEDSTVAMSSDSAAMSSAKVPEGMADAPNEEALLALTERTGYSLVQENGQRKYGGPPPGWDGPHPERG

Parental  CEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFDGKNRGYAFVMYCHKHEAKRAVRELNNYEIRPGR
          CEVFVGKIPRDVYEDELVPVFE.VGRIYELRLMMDFDGKNRGYAFVMYCHK..AKRAVRELN.YEIRPGR
Retrocopy CEVFVGKIPRDVYEDELVPVFEMVGRIYELRLMMDFDGKNRGYAFVMYCHKQDAKRAVRELNDYEIRPGR

Parental  LLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA
          LLGVCCSVDNCRLF.GGIPK.KKREEILEEI.KVTEGVLDVIVYASAADK.KNRGFAFVEYESHRAAAMA
Retrocopy LLGVCCSVDNCRLFLGGIPKLKKREEILEEITKVTEGVLDVIVYASAADKKKNRGFAFVEYESHRAAAMA

Parental  RRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMETVKILYVRNLMIETTEDTIKKSFGQFNPGCVERVKKI
          RRKL.P...QLWGH.IAVDWAEPEIDVDEDVMETVK.LYVRNLMIETTEDTIK.SFGQFNPGCVERVKKI
Retrocopy RRKLLPRGTQLWGHHIAVDWAEPEIDVDEDVMETVKVLYVRNLMIETTEDTIKTSFGQFNPGCVERVKKI

Parental  RDYAFVHFASREDAVHAMNSLNGTELEGSCLEVTLAKPVDKEQYSRYQKAAKGGGAAEAVAQPPSYVYSC
          RDYAFVHF.SREDAVHAMNSLNGTELEGSCLEVTLAKPVDKEQY.RYQKA.KG.G.AEAVAQ.PSYVYS.
Retrocopy RDYAFVHFTSREDAVHAMNSLNGTELEGSCLEVTLAKPVDKEQYLRYQKATKGCGGAEAVAQLPSYVYSY

Parental  DPYTLAYYGYPYNALIGPNRDYFVKAGSIRGRGRGAAGNRAPGPRGSYLGGYSAGRGIYSRYHEGKGKQQ
          DPYTL.YY.YP.N.LIGPN.DYFVKAGS.RGRGRGAAGNRAPGPRGSY.GGYSAGRG.YSRYHE.KG.QQ
Retrocopy DPYTLTYYSYPCNVLIGPNQDYFVKAGSVRGRGRGAAGNRAPGPRGSYFGGYSAGRGVYSRYHEEKGNQQ

Parental  EKGYELVPNLEISAVNPVAIKPGTVAIPAIGAQYSMFPAAPAPKMIEDGKIHTMEHMISPIAVQPDPASA
          E.GYELVPNLEISAVNPVA.KPGTV.IPAIGAQY.M..AAPAPKMIEDGKIHTME..ISP.AVQPD.ASA
Retrocopy EQGYELVPNLEISAVNPVAMKPGTVVIPAIGAQYPMYQAAPAPKMIEDGKIHTMEQVISPVAVQPDQASA

Parental  AAAAAAAAAAAAVIPAVSTPPPFQGRPITPVYTVAPNVQRIPTAGIYGASYVPFAAPATATIATLQKNAA
          AAA.AA.A....VIPAVSTPPPFQGRPITP.YTVAP.VQRIPT.GIYGASYVPFAAPATATIATLQ.NAA
Retrocopy AAATAATA----VIPAVSTPPPFQGRPITPIYTVAPFVQRIPTTGIYGASYVPFAAPATATIATLQNNAA

Parental  AAVYGGYAGYIPQAFPAAAIQVPIPDVYQTY
          AA.YGGYA.YIPQAFPAAAIQVPIPD.YQTY
Retrocopy AAMYGGYADYIPQAFPAAAIQVPIPDAYQTY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_273 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Monodelphis domestica	ENSMODG00000007003	1 retrocopy	retro_mdom_39,
Otolemur garnettii	ENSOGAG00000009179	1 retrocopy	retro_ogar_3144,
Otolemur garnettii	ENSOGAG00000029367	1 retrocopy	retro_ogar_273 ,