RetrogeneDB ID: retro_ogar_28

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873529.1:13100994..13102827(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000033330
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000001009
• Aliases: None
• Description: None

Sequence

>retro_ogar_28
ATGGCTGAGTGGGCCGTGTCGCGCTCCGCTGGCCGCAAGGCCCGGGCGTCCCGCTCCTCCCGAAACGTCGCAGGTACTAA
ACAGACAAGTGCTTTGAAACAAGAAGATGCTTCTAAAAGGAAAGCAGAACTAGAAGCAGCTGTAAGAAAGAAGATTGAGT
TTGAGAGAAAAGCTCTCCATATAGTCGAACAGCTTTTAGAAGAGAATATTACAGAAGACTTCCTAATGGAGTGTGGGAAG
TTCATCACACCTGCTCACTACAACGATGTCGTGGATGAACGCTCTATTGTCAATCTCTGTGGATATCCTTTATGTCAGAA
GAGGCTGGGAGTTGTACCAAAACAGAAATATAAAATTTCCACGAAAACCAATAAAGTCTACGATATTACTGAAAGAAAGG
CTTTTTGCAGTAATTTTTGTTACCAAGCATCTAAGTTTTTTGAAGCACAAATTTCCAAAACTCCGGTATGGGTTCGAGAA
GAAGAGAGGCATCCTGATTTTCAGCTGCTAAAAGAGGGACAAAGTGGCCATGCTGGAGAAGAAGTACAGTTATGCAATAA
AGTCATTAAAACATCAGATATTGACAATTCCAGCCGTTTTGAAAAGCAATATGAATCTAGTTCTTCTAGCACTCATAGTG
ATAGCAGCAGTGATAATGAGCAAGACTTTGTTTCCTCCCTTCTACCAGGAAACAGACCAAATTCAACAAATATTAGGCCA
CAGCTACACCCAGAAAGCGTAGTGAAAAAGAAAACTTGTCAAAAAGTTAATTCCAAACACAAAGACAAAGAACAGACAGT
CGTAGGTATCACTGAACAGTTGGGCAATTGCAGATTAGATAGTCAGGAGAAAGCTGTTGCATATGAACTTCCTTTACAGA
AAGTAAATACTCAGATTTCTTTAAGTAGTACTTTGCCTGAGAGATCAAAAGCTTCTGAAAATTCTGATTATAAATACAGT
AGGTCAGATATAACTCTAGTAGGCATAAGTAAGAAAAGTGCTGAGCATTTTAAGAAAAAATTTGCCAAATCAAACCAAGT
TTCTGGGCCAGCGTCTAGTTCAGTTCAGGTGTGTCCTGAAGTTGCAAAGACTAACTTACTTCAAGTTTTGAAGGAGACTT
TGACTGAGTGGAAGACAGAAGAAACTTTGAGGTTTTTGTATGGCCAGAATTATGCTTCCGTGTGTCTGAAACCTTCTTCA
GCCCCTCTGGTTAAAGAAGAACTTGATGAAGATGACATAAACTCTGATCCAGATAGTCATTCCCCTTCCTGGAGGGAACC
TCAAAACAGCTTGGATGAGTCTTTACCTTTTAGGGGCTCAGATACAGCCATTAAACCTTTGCCAAGTTATGAGAACTTGA
AAAGAGAAACTGAAAAATTAAATCTAAGGATCAAGGAGTTTTATAGAGGACGATATATTTTGAATGAAGAAACCACCAAA
TCACAAGACTCCGAAGAGCATGATCCCACCTTTCCACTGATAGATTCAAGTTCCCAGAACCAAATTAGAAAACGCATCGT
ACTTGAAAAATTGAGTAAAGTATTGCCTGGACTTTTGGGTCCTCTTCAGATTACCTTGGGAGATATGTACACACAACTTA
AAAATCTTGTCCGAACTTTCAGGTTAACAAATAGAAATATTATACACAAACCTGCAGAGTGGACTTTAATTGCTGTAGTG
TTGCTGTCATTACTGACCCCAACTCTTGGCATTCCGAAGCATTCTCAGGAAAATGAGATGTTTACACGGTTTATAGCCAC
CCTGCTGGACGAATTACATTTAAAAAATGAAGACCTTGAAACTTTAACCACCATATTTAGAACCAGCTGTTAA

Alignment

ORF - retro_ogar_28 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.02 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MADGAVSRSAGRKARASGSSRNAAVGTKQTSALKQEDASKRKAELEAAVRKKIEFERKALHIVEQLLEEN
          MA..AVSRSAGRKARAS.SSRN.A.GTKQTSALKQEDASKRKAELEAAVRKKIEFERKALHIVEQLLEEN
Retrocopy MAEWAVSRSAGRKARASRSSRNVA-GTKQTSALKQEDASKRKAELEAAVRKKIEFERKALHIVEQLLEEN

Parental  ITEDFLMECGKFITPAHYNDVVDERSIVNLCGYPLCQKRLGVVPKQKYKISTKTNKVYDITERKAFCSNF
          ITEDFLMECGKFITPAHYNDVVDERSIVNLCGYPLCQKRLGVVPKQKYKISTKTNKVYDITERKAFCSNF
Retrocopy ITEDFLMECGKFITPAHYNDVVDERSIVNLCGYPLCQKRLGVVPKQKYKISTKTNKVYDITERKAFCSNF

Parental  CYQASKFFEAQISKTPVWVREEERHPDFQLLKEGQSGHAGEEVQLCNKVIKTSDIDNSSRFEKQYESSSS
          CYQASKFFEAQISKTPVWVREEERHPDFQLLKEGQSGHAGEEVQLCNKVIKTSDIDNSSRFEKQYESSSS
Retrocopy CYQASKFFEAQISKTPVWVREEERHPDFQLLKEGQSGHAGEEVQLCNKVIKTSDIDNSSRFEKQYESSSS

Parental  STHSDSSSDNEQDFVSSLLPGNRPNSTNIRPQLHPESVVKKKTCQKVNSKHKDKEQTVVGITEQLGNCRL
          STHSDSSSDNEQDFVSSLLPGNRPNSTNIRPQLHPESVVKKKTCQKVNSKHKDKEQTVVGITEQLGNCRL
Retrocopy STHSDSSSDNEQDFVSSLLPGNRPNSTNIRPQLHPESVVKKKTCQKVNSKHKDKEQTVVGITEQLGNCRL

Parental  DSQEKAVAYELPLQKVNTQISLSSTLPERSKASENSDYKYSRSDITLVGISKKSAEHFKKKFAKSNQVSG
          DSQEKAVAYELPLQKVNTQISLSSTLPERSKASENSDYKYSRSDITLVGISKKSAEHFKKKFAKSNQVSG
Retrocopy DSQEKAVAYELPLQKVNTQISLSSTLPERSKASENSDYKYSRSDITLVGISKKSAEHFKKKFAKSNQVSG

Parental  PASSSVQVCPEVAKTNLLQVLKETLTEWKTEETLRFLYGQNYASVCLKPSSAPLVKEELDEDDINSDPDS
          PASSSVQVCPEVAKTNLLQVLKETLTEWKTEETLRFLYGQNYASVCLKPSSAPLVKEELDEDDINSDPDS
Retrocopy PASSSVQVCPEVAKTNLLQVLKETLTEWKTEETLRFLYGQNYASVCLKPSSAPLVKEELDEDDINSDPDS

Parental  HSPSWREPQNSLDESLPFRGSDTAIKPLPSYENLKRETEKLNLRIKEFYRGRYILNEETTKSQDSEERDP
          HSPSWREPQNSLDESLPFRGSDTAIKPLPSYENLKRETEKLNLRIKEFYRGRYILNEETTKSQDSEE.DP
Retrocopy HSPSWREPQNSLDESLPFRGSDTAIKPLPSYENLKRETEKLNLRIKEFYRGRYILNEETTKSQDSEEHDP

Parental  TFPLIDSSSQNQIRKRIVLEKLSKVLPGLLGPLQITLGDMYTQLKNLVRTFRLTNRNIIHKPAEWTLIAV
          TFPLIDSSSQNQIRKRIVLEKLSKVLPGLLGPLQITLGDMYTQLKNLVRTFRLTNRNIIHKPAEWTLIAV
Retrocopy TFPLIDSSSQNQIRKRIVLEKLSKVLPGLLGPLQITLGDMYTQLKNLVRTFRLTNRNIIHKPAEWTLIAV

Parental  VLLSLLTPTLGIPKHSQENEMFTRFIATLLDELHLKNEDLETLTTIFRTSC
          VLLSLLTPTLGIPKHSQENEMFTRFIATLLDELHLKNEDLETLTTIFRTSC
Retrocopy VLLSLLTPTLGIPKHSQENEMFTRFIATLLDELHLKNEDLETLTTIFRTSC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_28 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000020158	1 retrocopy	retro_cfam_106,
Myotis lucifugus	ENSMLUG00000001016	1 retrocopy	retro_mluc_262,
Otolemur garnettii	ENSOGAG00000001009	1 retrocopy	retro_ogar_28 ,
Taeniopygia guttata	ENSTGUG00000006076	1 retrocopy	retro_tgut_24,