RetrogeneDB ID: retro_mluc_262

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429774:10745908..10747744(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000017495
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000001016
• Aliases: None
• Description: None

Sequence

>retro_mluc_262
ATGGCTGAATCTGCCGGGCTGTCCCTGGCCGGTGGCAAGGCCCGGGCCCACCACGCCTCTCGAAAGGCCGCAGGCACTAA
ACAGACAAGTACCTTGAAACAGGAAGGTGCTTCTAAAAGGAAAGCAGAACTAGAAGAGACTGTGAGAAAGAAGATTGAGT
TTGAGAGAAAAGCTCTACATATTGTTGAACAGCTTTTAGAAGAGAATATTACAGAAGAATTCTTCATGGAGTGTGGGAAG
TATATCACACCTGCTCGCTACAGCGATGTCGTGGATGAACGTTCTATTATCAAGCTCTGTGGTTATCCCTTATGTCACAA
GAAGCTAGGGATTGTACCAAAGCAGAAATATAAAATTTCTAACAAGACAAACAAAGTCTATGATATTACTGAAAGAAAGT
GTTTTTGCAGCAATTTTTGTTATAAAGCATCCAAGTTTTTTGAAGCACAAATTCCTCAAACTCCAGTATGGGTTCGAGAA
GAAGAAAGGCACCCTGATTTTCAGCTGCTACGGGAGGGACAACGTGGCCATTCTGGAGAAGAAGTACAGTTATGCAGTAA
GACCATTAAAACATCAGATGTTGACAATCCTGGCCATATTGAGAAGCAATATGAATCTAATTTTTCTAGCATTCCTAGTG
ATAGTAGCAGTGATGACGAGCAAGACTTTATTTCCTCCATTCTACCAGGAAACAGACCAAATGCAACGGGTATAAGGCAA
CAGCTGCACAAAGAAAGCATCATGAAGAAGAAAGCTTGTCAAAAATCGAACTTCAAACAAAAAGACAAAGAACAGGCAGT
AATAAGTATTACTGAGCAGTTAGGCAATTGCAGATTAGATAGTCAGGAGAAAGCTGCTACTTGTGAACTTCCTTTACAGA
CGGTAAATACTCAGGTTTCTTTCAATAGTCCTTCAAGAAACAACGTGGATGCTCCAGAAATCCCTGAAAATAGATACAAT
AGTTCAGAAATAACTTTAGTAGGCATAAGTAAGAAAAGTGCTGGACATCTTAAGAGGAAATTTGGCAAATCAAACCAAAT
TTCTCGGTCAGCTTCTAGTTCAGTGCAGGTGTGCCCTGAAGTTGCAAAGGCAAACTTACTCAAAGTTCTGAAGGAGACTC
TGATTGAGTGGAAGACGGAAGCAACTTTGAGGTTTTTGTACGGCCAGAATTATGCTTCTGTGTGTCTAAAACCCGCTTCA
GTCCCTCTGGTTAAAGAAGAGGAGCTTGATGAAGATGACATAAACTCTGACCCAGATAGTCATTCCCCCGCCTTGCAGGA
ATCTCAGGACAGCTTGGATGAGTCTTTGCCTTTCAGGGCCTCAGATACAGCCATTAAACCACTGCCAAGTTATGAGAGCT
TGAAAAAGGAAAATGAAACATTAACCCTAAGGATCAGAGAGTTTTATAGAGGACAGTATGTTTTAAATGAAGAAACCACC
AAATCACAAGACTCAGAAGAGCACGATCGCACCTTTCCACTGATAGATTCAAGTTCTCAGAACCAGATTAGAGAACGCAT
CGTACTCCAAAAATTGAGTAAAGTATTGCCGGGACTTTTGGGGCCGCTTCAGATGACATCAGGACATATTTGCACACCAC
TTAAAAATCTTGTTCGAACTTTCAGATTAACAAATAGAAATATTATCCACAAACCTGCAGAATGGACCTTAATTGCTATG
GTGTTGCTTTCATTACTGACGCCGATTCTTGGCATTCAGAAGCATTCTCGGGAAAATATGGTGTTTACGCAGTTTCTAGC
TACCCTGCTTGAAGAATTACATTTAAAGAATGAAGACCTTGAAAATTTAACCATCATATTTAGAACTGGCTGTTAA

Alignment

ORF - retro_mluc_262 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.31 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAESAGLSRAGRKARAHRASRKAAGTKQTSTLKQEDASKRKAELEETVRKKIEFERKALHIVEQLLEENI
          MAESAGLS.AG.KARAH.ASRKAAGTKQTSTLKQE.ASKRKAELEETVRKKIEFERKALHIVEQLLEENI
Retrocopy MAESAGLSLAGGKARAHHASRKAAGTKQTSTLKQEGASKRKAELEETVRKKIEFERKALHIVEQLLEENI

Parental  TEEFLKECGKCITPAHYSDVVDERSIIKLCGYPLCHKKLGIVPKQKYKISTKTNKVYDITERKCFCSNFC
          TEEF..ECGK.ITPA.YSDVVDERSIIKLCGYPLCHKKLGIVPKQKYKIS.KTNKVYDITERKCFCSNFC
Retrocopy TEEFFMECGKYITPARYSDVVDERSIIKLCGYPLCHKKLGIVPKQKYKISNKTNKVYDITERKCFCSNFC

Parental  YKASKFFEAQIPKTPVWVREEERHPDFQLLQEGQSGHSGEEVQLCSKTIKTSDVDSPGHIEKQYESNSSS
          YKASKFFEAQIP.TPVWVREEERHPDFQLL.EGQ.GHSGEEVQLCSKTIKTSDVD.PGHIEKQYESN.SS
Retrocopy YKASKFFEAQIPQTPVWVREEERHPDFQLLREGQRGHSGEEVQLCSKTIKTSDVDNPGHIEKQYESNFSS

Parental  IHSDSSSDNEQDFVSSILPGNRPNATGIRQQLHIKSIMKKKACEKSNFKHKDKEQAVISITEQLGNCRLD
          I.SDSSSD.EQDF.SSILPGNRPNATGIRQQLH..SIMKKKAC.KSNFK.KDKEQAVISITEQLGNCRLD
Retrocopy IPSDSSSDDEQDFISSILPGNRPNATGIRQQLHKESIMKKKACQKSNFKQKDKEQAVISITEQLGNCRLD

Parental  SQEKAATCELPLQKVNTQVSLNSPSRENLDASEIPENKYNSSEITLVGISKKSAEHFKRKFVKSNQVSRS
          SQEKAATCELPLQ.VNTQVS.NSPSR.N.DA.EIPEN.YNSSEITLVGISKKSA.H.KRKF.KSNQ.SRS
Retrocopy SQEKAATCELPLQTVNTQVSFNSPSRNNVDAPEIPENRYNSSEITLVGISKKSAGHLKRKFGKSNQISRS

Parental  ASSSVQVCPEVAKANLLKVLKETLIEWKTEETLRFLYGQNYASVCLKPSSVPLVKEEELDEDDINSDPDS
          ASSSVQVCPEVAKANLLKVLKETLIEWKTE.TLRFLYGQNYASVCLKP.SVPLVKEEELDEDDINSDPDS
Retrocopy ASSSVQVCPEVAKANLLKVLKETLIEWKTEATLRFLYGQNYASVCLKPASVPLVKEEELDEDDINSDPDS

Parental  HSPTLRESQDSLDESLPFRASDTAIKPLPSYESLKKETETLNLRIREFYRGQYVLNEETTKSQDSEEHDP
          HSP.L.ESQDSLDESLPFRASDTAIKPLPSYESLKKE.ETL.LRIREFYRGQYVLNEETTKSQDSEEHD.
Retrocopy HSPALQESQDSLDESLPFRASDTAIKPLPSYESLKKENETLTLRIREFYRGQYVLNEETTKSQDSEEHDR

Parental  TFPLIDSSSQNQIRKRIVLEKLSKVLPGLLGPLQITLGDIYTQLKNLVRTFRLTNRNIIHKPAEWTLIAM
          TFPLIDSSSQNQIR.RIVL.KLSKVLPGLLGPLQ.T.G.I.T.LKNLVRTFRLTNRNIIHKPAEWTLIAM
Retrocopy TFPLIDSSSQNQIRERIVLQKLSKVLPGLLGPLQMTSGHICTPLKNLVRTFRLTNRNIIHKPAEWTLIAM

Parental  VLLSLLTPILGIQKHSQENMVFTQFLATLLEELHLKNEDLENLTIIFRTSC
          VLLSLLTPILGIQKHS.ENMVFTQFLATLLEELHLKNEDLENLTIIFRT.C
Retrocopy VLLSLLTPILGIQKHSRENMVFTQFLATLLEELHLKNEDLENLTIIFRTGC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_262 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000020158	1 retrocopy	retro_cfam_106,
Myotis lucifugus	ENSMLUG00000001016	1 retrocopy	retro_mluc_262 ,
Otolemur garnettii	ENSOGAG00000001009	1 retrocopy	retro_ogar_28,
Taeniopygia guttata	ENSTGUG00000006076	1 retrocopy	retro_tgut_24,