RetrogeneDB ID: retro_ogar_2694

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873649.1:66918..67375(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RBM8A
• Ensembl ID: ENSOGAG00000000202
• Aliases: None
• Description: RNA binding motif protein 8A [Source:HGNC Symbol;Acc:9905]

Sequence

>retro_ogar_2694
GAGGGTGGAGGCAAGAGCATTAACAAGGTGAAAGAAAAATTGAGAAAATGGAAGGGCCACGGCTTCAGCTCTGAAAAGGA
ACCCCATCAAGGATGCATGAGAATTATGACAGTGCTGAGCAGGTGGCTCTGAGCTGGGACCACCACAGCTCTGTTGAAGG
CTGGATTCTCTTTGTCACTGGAGTCCAGGAGGAAGCCACTGAAGAAGATATCTATGACAAATTTTTGGAATATGGGGGAA
TAAAAACCATCCATCTCATTCTGGATAGGCGAACAAGATACCTGAAAGGGTATGTTCTAGTTGAATATGAACTATAAAAG
GAGACCCAGAGTTCTATGGAGGGACTCAGTGGCCAAGAATTGATGGGACAGCCAGTGTGCACTAGTGTTTTGTTCGAGGT
CTACCCAAGGGCAGGAGGAAAGGTGGCTGAAGACGCAGCAGGAGTCCAAATCAGAGA

Alignment

ORF - retro_ogar_2694 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.03 %
• Parental protein coverage: 87.01 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  DGAPESIHKLKEKAKKRKGRGFGSEE-GSRARMREDYDSVEQ-DGDEPGPQR-SVEGWILFVTGVHEEAT
          .G...SI.K.KEK..K.KG.GF.SE..G...RM.E.YDS.EQ..G.E.GP...SVEGWILFVTGV.EEAT
Retrocopy EGGGKSINKVKEKLRKWKGHGFSSEK<GTPSRMHENYDSAEQ<GGSELGPPQ>SVEGWILFVTGVQEEAT

Parental  EEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP
          EEDI.DKF.EYG.IK.IHL.LDRRT.YLKGY.LVEYE..KE.Q..MEGL.GQ.LMGQP......F...P.
Retrocopy EEDIYDKFLEYGGIKTIHLILDRRTRYLKGYVLVEYEL*KETQSSMEGLSGQELMGQPVCTSVLFEVYPR

Parental  KG-KRRGGRRRSRSPDRR
          .G....G.R.RSRSP..R
Retrocopy AG<RKGG*R-RSRSPNQR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2694 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 20 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000016021	1 retrocopy	retro_dnov_47,
Echinops telfairi	ENSETEG00000008411	1 retrocopy	retro_etel_1200,
Felis catus	ENSFCAG00000026379	1 retrocopy	retro_fcat_955,
Homo sapiens	ENSG00000131795	1 retrocopy	retro_hsap_1349,
Macropus eugenii	ENSMEUG00000016058	2 retrocopies	retro_meug_873, retro_meug_952,
Myotis lucifugus	ENSMLUG00000017436	2 retrocopies	retro_mluc_179, retro_mluc_1932,
Mus musculus	ENSMUSG00000038374	2 retrocopies	retro_mmus_137, retro_mmus_776,
Otolemur garnettii	ENSOGAG00000000202	2 retrocopies	retro_ogar_2694 , retro_ogar_771,
Ochotona princeps	ENSOPRG00000013316	2 retrocopies	retro_opri_1146, retro_opri_659,
Rattus norvegicus	ENSRNOG00000021215	2 retrocopies	retro_rnor_1434, retro_rnor_1828,
Sorex araneus	ENSSARG00000013289	2 retrocopies	retro_sara_116, retro_sara_217,
Tupaia belangeri	ENSTBEG00000014947	2 retrocopies	retro_tbel_3548, retro_tbel_804,