RetrogeneDB ID: retro_ogar_254

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873562.1:11469919..11470246(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSOGAG00000024444
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000002526
• Aliases: None
• Description: None

Sequence

>retro_ogar_254
TGGTGCCGTTCTGCCCCAGGCTGCAGGAATGGGCTGATTGCGGAGGAGGGACAGTATTGCTACCCCTTTGCCTGCAACAC
CTGCCCCTACGTGCACAACATCACCCGCAAGGTGACAAATCGAAAGTATTCAAAGCTGAAAAAAGTGGATGATGTACTTG
GGGGAGCATCTGCCTGGGAGAATGTTGACTCTACTGCAGAGTCGTGTCCCAAATGTGAACATCCTCGTGCTTACTTCATG
CAGCTTCAGACCTCCTCTGCAGATGAGCCAATGACTACCTTCTACAAGTGCTGCAATGCTCAGTGTGGACACCACTGGAG
GGACTAG

Alignment

ORF - retro_ogar_254 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.29 %
• Parental protein coverage: 95.37 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PGCGNGLIVEEGQRCYRFACNTCPYVHNITRKVTNRKYPKLKEVDDVLGGAAAWENVDSTAEPCPKCEHP
          PGC.NGLI.EEGQ.CY.FACNTCPYVHNITRKVTNRKY.KLK.VDDVLGGA.AWENVDSTAE.CPKCEHP
Retrocopy PGCRNGLIAEEGQYCYPFACNTCPYVHNITRKVTNRKYSKLKKVDDVLGGASAWENVDSTAESCPKCEHP

Parental  RAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD
          RAYFMQLQT.SADEPMTTFYKCCNAQCGH.WRD
Retrocopy RAYFMQLQTSSADEPMTTFYKCCNAQCGHHWRD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_254 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 11 parental genes, and 16 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000019715	1 retrocopy	retro_cfam_1881,
Callithrix jacchus	ENSCJAG00000011568	1 retrocopy	retro_cjac_2660,
Echinops telfairi	ENSETEG00000009989	2 retrocopies	retro_etel_1166, retro_etel_1543,
Felis catus	ENSFCAG00000009110	2 retrocopies	retro_fcat_1978, retro_fcat_409,
Homo sapiens	ENSG00000161980	1 retrocopy	retro_hsap_1861,
Myotis lucifugus	ENSMLUG00000015593	3 retrocopies	retro_mluc_1565, retro_mluc_1943, retro_mluc_341,
Oryctolagus cuniculus	ENSOCUG00000013608	1 retrocopy	retro_ocun_145,
Otolemur garnettii	ENSOGAG00000002526	2 retrocopies	retro_ogar_1101, retro_ogar_254 ,
Pan troglodytes	ENSPTRG00000007525	1 retrocopy	retro_ptro_1241,
Pteropus vampyrus	ENSPVAG00000000530	1 retrocopy	retro_pvam_928,
Sus scrofa	ENSSSCG00000007970	1 retrocopy	retro_sscr_1141,