RetrogeneDB ID: retro_ogar_2169

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873598.1:6550437..6550741(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BCAP29
• Ensembl ID: ENSOGAG00000013116
• Aliases: None
• Description: B-cell receptor-associated protein 29 [Source:HGNC Symbol;Acc:24131]

Sequence

>retro_ogar_2169
GCAACAGTTGCAACCTTCCATTCTGCTGACATAGGACTCGTTTTAATCTTCTGTCTTCCTTCTATTCCTCCTCAGAGATG
GCAGCAGATCTTTCCATTTACTGTCTGGGCAAAATTGTGACTTTCTGGAAGAAGGCTTTCCTTACCCTTATAACCTTACT
GATGGTTCTATGTCTAGATGCTGTGAGAGAAGGAGTAAGCATTCTGCTACTTACACCCTTCAGCAGACCTCAACCAGCAG
ACCCACTGCCTGTGAACATACACAGGTGAAACATTTTAGGTTTCAAAGAAATCTTTTAATTTCT

Alignment

ORF - retro_ogar_2169 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.38 %
• Parental protein coverage: 52.04 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  AAVATFLYAEIGLILIFCLPFIPPQRWQKIFSFSFWS-KIATFWNKAFLTIIILLIVLFLDAVRE-VRKY
          A.VATF..A.IGL.LIFCLP.IPPQRWQ.IF.F..W..KI.TFW.KAFLT.I.LL.VL.LDAVRE...K.
Retrocopy ATVATFHSADIGLVLIFCLPSIPPQRWQQIFPFTVWA<KIVTFWKKAFLTLITLLMVLCLDAVRE<RSKH

Parental  SAGHILEKSSSPRPDAYEHTQMKLFRSQRNLYIS
          SA...L...S..RP.A.EHTQ.K.FR.QRNL.IS
Retrocopy SATYTLQQTSTSRPTACEHTQVKHFRFQRNLLIS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2169 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000016329	1 retrocopy	retro_cjac_2669,
Echinops telfairi	ENSETEG00000008025	1 retrocopy	retro_etel_194,
Oryctolagus cuniculus	ENSOCUG00000027511	1 retrocopy	retro_ocun_235,
Otolemur garnettii	ENSOGAG00000013116	1 retrocopy	retro_ogar_2169 ,