RetrogeneDB ID: retro_ogar_2152

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873596.1:8325482..8325698(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSOGAG00000016626
• Aliases: None
• Description: None

Sequence

>retro_ogar_2152
CACAGCTGCAGGCAGGCAGCCCTGCTCTGCGTCAAGGCCACAGAAGCAATTCCTCAAGAAAAATCAGCTGGGAAACAGAC
CGTGGAATTGGTGGGTTCAGAGAAACCAGCAATTAAATCTCAGCCAGTGAACCTTATTCAGTCTGTAAGAATAACGACAA
GAGTGCCATTGATGACAATGAACTCAATTGCAATTGCATTACTTTTATTATTTGGG

Alignment

ORF - retro_ogar_2152 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 53.25 %
• Parental protein coverage: 93.9 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  YSLLQAALLCVNAIAVLHEERFLKNIGWGTDQGIGGFGEEPGIKSQLVNLIRSVRTVMRVPLIIVNSVAI
          .S..QAALLCV.A......E...K..G..T....G...E.P.IKSQ.VNLI.SVR...RVPL...NS.AI
Retrocopy HSCRQAALLCVKATEAIPQE---KSAGKQTVELVGS--EKPAIKSQPVNLIQSVRITTRVPLMTMNSIAI

Parental  VLLLLFG
          .LLLLFG
Retrocopy ALLLLFG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2152 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000032961	1 retrocopy	retro_btau_13,
Callithrix jacchus	ENSCJAG00000004610	1 retrocopy	retro_cjac_3333,
Echinops telfairi	ENSETEG00000000303	1 retrocopy	retro_etel_1526,
Homo sapiens	ENSG00000134049	1 retrocopy	retro_hsap_1156,
Gorilla gorilla	ENSGGOG00000027939	1 retrocopy	retro_ggor_903,
Mus musculus	ENSMUSG00000090000	1 retrocopy	retro_mmus_150,
Nomascus leucogenys	ENSNLEG00000011450	1 retrocopy	retro_nleu_2504,
Otolemur garnettii	ENSOGAG00000016626	1 retrocopy	retro_ogar_2152 ,
Pongo abelii	ENSPPYG00000009141	3 retrocopies	retro_pabe_2850, retro_pabe_2851, retro_pabe_962,
Pan troglodytes	ENSPTRG00000010002	1 retrocopy	retro_ptro_791,
Tupaia belangeri	ENSTBEG00000001443	4 retrocopies	retro_tbel_1530, retro_tbel_2783, retro_tbel_3343, retro_tbel_3429,
Tursiops truncatus	ENSTTRG00000001019	1 retrocopy	retro_ttru_1930,