RetrogeneDB ID: retro_mputfur_894

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896966.1:1866056..1866542(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MTFR1
• Ensembl ID: ENSMPUG00000009909
• Aliases: None
• Description: mitochondrial fission regulator 1 [Source:HGNC Symbol;Acc:29510]

Sequence

>retro_mputfur_894
GGCAATCCACACGGTTCATCTCAAAGTATCGTAAGGAAAATTGGTACTAATTTATCGCTGATCCAGTGCCCAAAAGTTCA
GTTCCAGCTCACCAGCCCTACAACAAAAGGGAGCCGGAGCCATCCTGGAGAGGATGCAGTGGTGTCTTTTGCTGATGGCG
GATGGGTAGCCAAAGAAGGAGAGTGTTCAGCAAGACAAAGGACAGAGGTCAGATCAAGGGAGTCTCTTCAGGACGACCTT
CCTTTCTTTGAGAAGCTGCTAAGCAGGCAGTGTTCCTTACCAAACCTGTCTCCAGAAGAGCTTCCACAGAAGACAGCACT
AGCAAATGAGGAGGCATTGCAGATCTGTGCCCTTGAAAATGAACTTGCTGCTCTCAGAGCTCAGATGGCCCAAACTGTGA
CCCAGTAAGAACAGCAACATGTTATTCCAGGTGACTTAGATCCTACCACATCTGTTACTACACCACCATCCTCTGTCCCT
CTACCG

Alignment

ORF - retro_mputfur_894 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.88 %
• Parental protein coverage: 50.15 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GKPYGSSRSIVRKIGTNLSLIQCPRVQFQLTSPTTEWSPNHLGEDAVVSFADVGWVAKEEGECSTRQRTE
          G.P.GSS.SIVRKIGTNLSLIQCP.VQFQLTSPTT..S..H.GEDAVVSFAD.GWVAK.EGECS.RQRTE
Retrocopy GNPHGSSQSIVRKIGTNLSLIQCPKVQFQLTSPTTKGSRSHPGEDAVVSFADGGWVAK-EGECSARQRTE

Parental  VRSRQPLQDDLPFFEKPPSRQFSLPNLSPEDPQQKTALANEEALQKICALENELAALRAQIAKIVTLQEQ
          VRSR..LQDDLPFFEK..SRQ.SLPNLSPE...QKTALANEEALQ.ICALENELAALRAQ.A..VT..EQ
Retrocopy VRSRESLQDDLPFFEKLLSRQCSLPNLSPEELPQKTALANEEALQ-ICALENELAALRAQMAQTVTQ*EQ

Parental  QNLITGDLEPATSVTTPPSSIPPP
          Q..I.GDL.P.TSVTTPPSS.P.P
Retrocopy QHVIPGDLDPTTSVTTPPSSVPLP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_894 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_894 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 13 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000012281	1 retrocopy	retro_amel_1640,
Choloepus hoffmanni	ENSCHOG00000006664	3 retrocopies	retro_chof_1268, retro_chof_2700, retro_chof_483,
Dipodomys ordii	ENSDORG00000016322	1 retrocopy	retro_dord_293,
Homo sapiens	ENSG00000066855	1 retrocopy	retro_hsap_4849,
Macaca mulatta	ENSMMUG00000011263	1 retrocopy	retro_mmul_2590,
Mustela putorius furo	ENSMPUG00000009909	2 retrocopies	retro_mputfur_1244, retro_mputfur_894 ,
Oryctolagus cuniculus	ENSOCUG00000008165	1 retrocopy	retro_ocun_1594,
Pongo abelii	ENSPPYG00000018631	1 retrocopy	retro_pabe_3769,
Rattus norvegicus	ENSRNOG00000021359	1 retrocopy	retro_rnor_1821,
Tarsius syrichta	ENSTSYG00000010102	1 retrocopy	retro_tsyr_1899,