RetrogeneDB ID:

retro_chof_483

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_113487:2971..3955(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MTFR1
Ensembl ID:ENSCHOG00000006664
Aliases:None
Description:mitochondrial fission regulator 1 [Source:HGNC Symbol;Acc:29510]


Retrocopy-Parental alignment summary:






>retro_chof_483
ATGCTTGACTGGATTAAGTGCTTAATTAGGATGGTTTTCAACAAGTTGGAGTGAGCATGTAATCAGTACTTTGGTCTAGG
AAGCCATATGGTTCATTTCAAAGTATTGTAAGGAAAATTGGTTCTAATTTGTCTCTGATTCAGTGTCCAAGAGTTCAGTT
CCAGCTTACCAGCCATACAACAGAATAGAGTCTAACCACCAAGGAGAGGATGCAGTGGCATCTTTTGCTGATATTGGATG
GGTAGCCAAAGAAGATGGAGAGTGTTCAACAAATTAAGGACAGAAGTCAGGTCAAGACAATCCCTTCAGAAAGAACTTCC
TTTCTTTGAGAAGCCCCCAAGCAGGCAGATTTCCTTACCAAACCTGTCTTAAGAAGAGTCTCAACTGAGGACACAACACT
GGCGAATGAGGAAGCACTACAGAAGATCAGTGCTCTTGAAATGACTCACACTCTCAGAGCTCAGACTGCCAAAAATTGTG
ACCCTGCAAGAGCAGCAGAATATCATTGCAGGTGAATTAGATTCTACCACATCTGTTACCACAGCACTACCCTCCATCCC
ACCACCTCCACCACCAACTGCCCTCCCTGCAACAGAGCTCTACCAAAATACATCTGCTATTGATCTGATTAAAAAGCAAA
GAGTGAAAAAAGCTAATTGCTGAAAAGACGAGTCCAAAGAAACCTGACATGCCAAATATGGGTAGAAATCCTTAAAGATA
GGAACAGTGTAAAACCTCAGTCCATTAAAAAGTCAGAGCAAGATGTAAAGCCCAAACTAGTGGACCCTACAGACCCCGCT
GCCCTCATTGCAGGAGCTCTGAAAATGAAAGTTGTTCATTGGTTCAAAGCAATAGCCAAAGTGAAGTTGAAAAGTAATTC
CAAAATCAGAATCAGAGACCAAATCAGGAATGGTATTGTTTGGGCCACACAGGTTGAAGTCTATAGGAAAAATGAAGTCT
TTAATTGAAAATGGTTCAACTTCC

ORF - retro_chof_483 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.9 %
Parental protein coverage: 100. %
Number of stop codons detected: 3
Number of frameshifts detected 9


Retrocopy - Parental Gene Alignment:

ParentalMLDWIKRLIRMVF-QQVGVSMQSVLWSGKPYGSSRSIVRKIGTNLSLIQCPRVQFQLTSHATEWS-PDHQ
MLDWIK.LIRMVF.QQVGVSM.SVLWS.KPYGS..SIVRKIG.NLSLIQCPRVQFQLTSH.TE.S...HQ
RetrocopyMLDWIKCLIRMVF<QQVGVSM*SVLWSRKPYGSFQSIVRKIGSNLSLIQCPRVQFQLTSHTTE*S<SNHQ
ParentalEEDRVASFADVGWVAKEGGECST-RLRTEVRSRQPLQEDLPFFEKPPSRRISLSNLSQEEPQLRT-TALA
.ED.VASFAD.GWVAKE.GECST..LRTEVRSRQ.LQ..LPFFEKPPSR.ISL.NLS.EE.QLRT.T.LA
RetrocopyGEDAVASFADIGWVAKEDGECST<KLRTEVRSRQSLQKELPFFEKPPSRQISLPNLS*EESQLRT<TTLA
ParentalNEEALQKISALENELATLRAQIA-KIVTLQEQQNLIAGDLASTTSVTTALPCVPPPPPPPPPPLPATGLH
NEEALQKISALE....TLRAQ.A.KIVTLQEQQN.IAG.L.STTSVTTALP....PPPPPP..LPAT.L.
RetrocopyNEEALQKISALE-MTHTLRAQTA>KIVTLQEQQNIIAGELDSTTSVTTALPSI--PPPPPPTALPATELY