RetrogeneDB ID: retro_mputfur_663

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896932.1:9578019..9578558(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CDCA3
• Ensembl ID: ENSMPUG00000016781
• Aliases: None
• Description: cell division cycle associated 3 [Source:HGNC Symbol;Acc:14624]

Sequence

>retro_mputfur_663
CTGGCTGGAGTGGTAGACCCCAGTTCACCTAGTGCCAGCGTCCTGCATGCTCCCATCCAGCCAGAGAGCTCACTAGAGCC
AACCCTACAAGCAGGGTAGCAGCTGGAGGGTCCTAATTAGGCCAAGACCCAGATCCCCGCTCTCCTACCCTTGACATTGC
ATGGACACCTATGAAGACGAGCAGCGGAGAGCCCCCAAGCCGACTGGTGAACCGCTGGGTGAAGAATTTGAGACCAAAGC
CCCCCACATGGATCTACCCCCAGAGCCTGCTCTGCCTCTGCAGGCTACTTCACCTTCTAGGTTGGACTTGCCTCAGGCAC
CCAGTTTTCCTTTGAGGACCAGATGCCACCTGGGGGCCAGACTGAGCTTCCCTCCAAGCAGGTATCCTGCAAGGAGAAAG
CAGGACAGCCCTCAGAAACCCCTTGGCCAGCCAGGGCTTGGATTAGCCCTTAAAAGACCCTGAGACTCCCTGATCATCAC
GTTCTGAGGCTAATAGGTGGACAGTGGATGGCAAGGCACTAGGGAGCTGTCCCCTCACC

Alignment

ORF - retro_mputfur_663 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.03 %
• Parental protein coverage: 67.54 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  LARVADPRSPSAGILRTPIQVESSPQPNLPAGEQLEGPDQA-QDSDPRSPTLGIARTPMKTSTGEPSSPL
          LA.V.DP.SPSA..L..PIQ.ESS..P.L.AG.QLEGP..A.QD.DPRSPTL.IA.TPMKTS.GEP.S.L
Retrocopy LAGVVDPSSPSASVLHAPIQPESSLEPTLQAG*QLEGPN*A<QDPDPRSPTLDIAWTPMKTSSGEPPSRL

Parental  VKQ-LSEVFETEAPRSNLPPEPVLPLEATSSSELDLPL-GTQFSLEDQTPPCSQAELPSKQVFSKEEAGQ
          V...L.E.FET.AP...LPPEP.LPL.ATS.S.LDLP..GTQFS.EDQ.PP..Q.ELPSKQV..KE.AGQ
Retrocopy VNR<LGEEFETKAPHMDLPPEPALPLQATSPSRLDLPQ<GTQFSFEDQMPPGGQTELPSKQVSCKEKAGQ

Parental  PSETP-MASQGSDKPSRDPETPRSSGSKHNRWKANGKVLGRSPLT
          PSETP..ASQG.D.P..DPETP.SS.S..NRW...GK.LG..PLT
Retrocopy PSETP<LASQGLD*PLKDPETP*SSRSEANRWTVDGKALGSCPLT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_663 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_663 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000013985	1 retrocopy	retro_amel_1158,
Canis familiaris	ENSCAFG00000014650	4 retrocopies	retro_cfam_1100, retro_cfam_1940, retro_cfam_345, retro_cfam_633,
Cavia porcellus	ENSCPOG00000012334	1 retrocopy	retro_cpor_1073,
Felis catus	ENSFCAG00000004274	2 retrocopies	retro_fcat_1182, retro_fcat_1942,
Mustela putorius furo	ENSMPUG00000016781	1 retrocopy	retro_mputfur_663 ,
Pteropus vampyrus	ENSPVAG00000012300	4 retrocopies	retro_pvam_235, retro_pvam_248, retro_pvam_297, retro_pvam_667,
Rattus norvegicus	ENSRNOG00000015529	1 retrocopy	retro_rnor_2685,
Ictidomys tridecemlineatus	ENSSTOG00000023573	1 retrocopy	retro_itri_804,
Tupaia belangeri	ENSTBEG00000001905	1 retrocopy	retro_tbel_534,
Vicugna pacos	ENSVPAG00000009784	1 retrocopy	retro_vpac_296,