RetrogeneDB ID:

retro_pvam_248

Retrocopy
location
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_2151:73699..74216(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CDCA3
Ensembl ID:ENSPVAG00000012300
Aliases:None
Description:cell division cycle associated 3 [Source:HGNC Symbol;Acc:14624]


Retrocopy-Parental alignment summary:






>retro_pvam_248
GTATTTGAGACTGAAGCCTCCAAGTTGAACCTTCCCCGCAAAGCCTGTTCTGCCCTGAGAATCACCTTCATCTTCTGAAT
TGGACTTGCCTTTGGGCACTCAGTTTTCCCTTGAGGACCAGATGTCACCTTAGAGTCGGACTGAGCTCCCCTCCAAGATG
TGTTTTCTGAGGAGGAAACAAGACAGCCCTCAGAAACCCCAGTGGCCAACCAGGGTTCAGACAAGCCCTTGAGAAACCGG
AGGACTCCCTGATCTTCAAGTTCTCAGTGCAATAGATGGAAATGCAAGGGTAAGGTGCTAGGGAGATCTCTTCTCACCAT
CCTGCAGGATAAAAACCCTCTCTGGGACTCTGACACCATGACAGGGCAAACGACCTTCTCCACTAAGTAAAAATGTTAAG
GAGTTAAAGGAAGGGGCCATTTTGGGAACTGGATGACTTCTGAAAACTGGAGGACAAACATGGGAGCAAGGCCAGGACCA
TGACGAGGAAAATCAGCACTTTGCTTTGGTAGAGAAC

ORF - retro_pvam_248 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.14 %
Parental protein coverage: 64.53 %
Number of stop codons detected: 5
Number of frameshifts detected 3


Retrocopy - Parental Gene Alignment:

ParentalVFETEGPKSNLPPET-VLPLEAPSSSELDLPVGTQFSLEDKMAPGSQTELPSKQ-VFSEEETGQPSETPM
VFETE..K.NLP....VLP.E.PSSSELDLP.GTQFSLED.M.P.S.TELPSK..VFSEEET.QPSETP.
RetrocopyVFETEASKLNLPRKA>VLP*ESPSSSELDLPLGTQFSLEDQMSP*SRTELPSKM<VFSEEETRQPSETPV
ParentalASQSSDKPLRDLETPRSSGSKRSRRKPNGKVLGRSPLTILQDDNS-PGTLAR-QVKRLSPLSENVRELKE
A.Q.SDKPLR...TP.SS.S...R.K..GKVLGRS.LTILQD.N...GTL...Q.KR.SPLS.NV.ELKE
RetrocopyANQGSDKPLRNRRTP*SSSSQCNRWKCKGKVLGRSLLTILQDKNP>SGTLTP*QGKRPSPLSKNVKELKE
ParentalGTILGTGRLLRTGGQTWEQGQDHDKENQHFALVEN
G.ILGTG.LL.TGGQTWEQGQDHD.ENQHFALVEN
RetrocopyGAILGTG*LLKTGGQTWEQGQDHDEENQHFALVEN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide