RetrogeneDB ID: retro_mputfur_610

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896926.1:12781548..12782235(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ARIH2
• Ensembl ID: ENSMPUG00000014344
• Aliases: None
• Description: ariadne homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:690]

Sequence

>retro_mputfur_610
CATTCCTAGCTCCAGCTGTGCTCTGGTGCGGATTGCCCCCTGGTGATTCATGTATAGAAGTCCAGAGCTTGCTAAGTACA
GTCCAATCAGTGCAATGAGGTCTTCTGTTTCAAGTTGTCAAATGTGTCATGTGCCAGTCTATGCCACGATCTGGAAATGG
CTCAGGAAATGTGCTGGTGACTCTGAAACAGCCAACTACCTAGGTGCTCACGCTTAAGACTATCCCAAGTGCAACTTCTG
CATTGAGAAGAGCAAAGGCTGCAATCACATGTGATGCTCCAACTGTAATCATGACTTCCACTGGATATGTCTAGGAGATT
AGAAGACCCACAGCAGCAAGTACTATAACTGCAGCTGGAACAAGTAGAACTCTGACACTGTCGACCAGATCCAACAAGCC
CAGGCCAGGAAGAAGTCCTTGTCCTACTTTGAGAGGGGGAAAGCCATAAGAGCTTGCAGCTGAAGGTGCAGATTTAGCAG
TGGATTCATGAGAAGATTCAGAAGAGGGACATGAACAATCTGGGGACCTGGAATGACTGGCAGCACCTACAGAATGCTGT
CACGCTCTTGGCCAAGTGCTGATACACCCTGCAGGACCCATGTCCATGTACATATTACATGGAGTCTGGACCCAGGAAGA
AGCTATTGGAACACCAGCAGGCTCAGCTGCAGGCTGTCATGGAAAGT

Alignment

ORF - retro_mputfur_610 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.09 %
• Parental protein coverage: 55.82 %
• Number of stop codons detected: 9
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  HYQLQLCPGADCPMVIRVQEPRARRVQCNRCNEVFCFK-CRQMYHAPTDCATIRKWLTKCADDSETANYI
          H..LQLC.GADCP.VI.V...RA..VQ.N.CNEVFCFK.C.QM.H.P...ATI.KWL.KCA.DSETANY.
Retrocopy HS*LQLCSGADCPLVIHV*KSRAC*VQSNQCNEVFCFK>C-QMCHVPV-YATIWKWLRKCAGDSETANYL

Parental  SAHTKDCPKCNICIEKNGGCNHMQCSKCKHDFCWMCLGDWKTHGSEYYECSRYKENPDIVNQSQQAQARE
          .AH..D.PKCN.CIEK..GCNHM.CS.C.HDF.W.CLGD.KTH.S.YY.CS..K.N.D.V.Q.QQAQAR.
Retrocopy GAHA*DYPKCNFCIEKSKGCNHM*CSNCNHDFHWICLGD*KTHSSKYYNCSWNK*NSDTVDQIQQAQAR-

Parental  ALKKYLFYFER-WENHNKSLQLEAQTYQRIHEKIQERVMNNLGTWIDWQYLQNAAKLLAKCRYTLQYTYP
          ..KK.L.YFER..E.H.KSLQL..Q..Q.IHEKIQ.R.MNNLGTW.DWQ.LQNA..LLAKC.YTLQ...P
Retrocopy --KKSLSYFER<GESH-KSLQLKVQI*QWIHEKIQKRDMNNLGTWNDWQHLQNAVTLLAKC*YTLQDPCP

Parental  YAYYMESGPRKKLFEYQQAQLEAEIEN
          ..YYMESGPRKKL.E.QQAQL.A..E.
Retrocopy CTYYMESGPRKKLLEHQQAQLQAVMES

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_610 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_610 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000013035	1 retrocopy	retro_amel_1021,
Callithrix jacchus	ENSCJAG00000003305	1 retrocopy	retro_cjac_1106,
Homo sapiens	ENSG00000177479	1 retrocopy	retro_hsap_1876,
Gorilla gorilla	ENSGGOG00000017134	1 retrocopy	retro_ggor_1373,
Myotis lucifugus	ENSMLUG00000013946	1 retrocopy	retro_mluc_1869,
Mustela putorius furo	ENSMPUG00000014344	1 retrocopy	retro_mputfur_610 ,
Mus musculus	ENSMUSG00000064145	1 retrocopy	retro_mmus_795,
Nomascus leucogenys	ENSNLEG00000006710	1 retrocopy	retro_nleu_1228,
Oryctolagus cuniculus	ENSOCUG00000017699	1 retrocopy	retro_ocun_1838,
Pongo abelii	ENSPPYG00000013890	1 retrocopy	retro_pabe_1557,
Pan troglodytes	ENSPTRG00000014902	1 retrocopy	retro_ptro_1259,
Ictidomys tridecemlineatus	ENSSTOG00000001766	1 retrocopy	retro_itri_1047,