RetrogeneDB ID: retro_mputfur_456

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896910.1:20076913..20077494(-)
• Located in intron of: ENSMPUG00000007364

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: EMC3
• Ensembl ID: ENSMPUG00000017149
• Aliases: None
• Description: ER membrane protein complex subunit 3 [Source:HGNC Symbol;Acc:23999]

Sequence

>retro_mputfur_456
GAGCTGCAGCTCGACTCCAATGTGAGTCTCTAGTGGCCCTGTCCATGTTCACCATCACCGGCTCTGTGGGCATGATCCAC
CACCATGTGTCCATCCTGCTGCAGAGTGACAAGAAACTCACCCAAGAGCAAGTATTTGACAGCTAAAGTCCTATTACATA
GCACAGTCCTCAGGGAAAATGGAAGTATTCCCAAACAGTCCTTCTTGACATGAAAATATTACTTCCAAGACCACAAAGGA
CAGATTTTTCAAAAAACTAAAGAGAAAACAGTACTACCTTCTCTTATGACTGATTCCACTATGCTCACAGACATGGTGAA
AGGGAATTTAACAAATGTCATCCCAATCATTCTGACTAGTGAATGGATAAACATGACCTGCTCAGGCTTTGTTACAACCA
AAGGCCTATTTCTACTGATGCTGTTTTTTAAGCCTATGCTATAGGAAGGAATTCAACTACTCACATTAGCTGCATCTGAG
TACATGCTACATCCTGGTAATTCTACGTATTTGGAATTCAGAGCATTTATTCTTTCATTCTGGGCCAAAATGAAGCCAAT
GACCAACCAAGAACAATCCAG

Alignment

ORF - retro_mputfur_456 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.82 %
• Parental protein coverage: 75.1 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  ELLLDSNIRL-WVVLPIVIITFFVGMIRHYVSILLQSDKKLTQEQVSDS-QVLIRSRVLRENGKYIPKQS
          EL.LDSN..L..V.L....IT..VGMI.H.VSILLQSDKKLTQEQV.DS..VL..S.VLRENG..IPKQS
Retrocopy ELQLDSNVSL<LVALSMFTITGSVGMIHHHVSILLQSDKKLTQEQVFDS>KVLLHSTVLRENGS-IPKQS

Parental  FLTRKYYFNNPEDGFFKKTKRKVVPPSPMTDPTMLTDMMKGNVTNVLPMILIGGWINMTFSGFVTTKVPF
          FLT.KYYF.......F.KTK.K.V.PS.MTD.TMLTDM.KGN.TNV.P.IL...WINMT.SGFVTTK..F
Retrocopy FLT*KYYFQDHKGQIFQKTKEKTVLPSLMTDSTMLTDMVKGNLTNVIPIILTSEWINMTCSGFVTTKGLF

Parental  PLTLRFKPMLQQGIELLTLDASW-VSSASWYFLNVFGLRSIYSLILGQDNAADQSRMMQ
          .L.L.FKPML..GI.LLTL.AS..V...SW.F..VFG..SIYS.ILGQ..A.DQ.R..Q
Retrocopy LLMLFFKPML*EGIQLLTLAASE<VHATSW*FY-VFGIQSIYSFILGQNEANDQPRTIQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_456 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_456 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000005202	1 retrocopy	retro_cfam_730,
Callithrix jacchus	ENSCJAG00000037305	1 retrocopy	retro_cjac_3209,
Equus caballus	ENSECAG00000024410	1 retrocopy	retro_ecab_737,
Felis catus	ENSFCAG00000024898	2 retrocopies	retro_fcat_1932, retro_fcat_2002,
Microcebus murinus	ENSMICG00000002333	2 retrocopies	retro_mmur_439, retro_mmur_707,
Mustela putorius furo	ENSMPUG00000017149	1 retrocopy	retro_mputfur_456 ,
Pteropus vampyrus	ENSPVAG00000012615	3 retrocopies	retro_pvam_1260, retro_pvam_1278, retro_pvam_1439,
Tursiops truncatus	ENSTTRG00000007554	2 retrocopies	retro_ttru_1311, retro_ttru_285,
Vicugna pacos	ENSVPAG00000003247	2 retrocopies	retro_vpac_308, retro_vpac_461,