RetrogeneDB ID: retro_mputfur_436

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896909.1:13317613..13318498(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000000498
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: SEPT2
• Ensembl ID: ENSMPUG00000000166
• Aliases: None
• Description: septin 2 [Source:HGNC Symbol;Acc:7729]

Sequence

>retro_mputfur_436
ATCATCCCCGGAGCTGTAGAGAAAATTGAAAGAACTGTCCAGATTGAGGCTTCGACTGTGGAGATCGAGGAGCGAGGGGT
CAAGCTACGCCTGACAGTGGTGGACGCGCCTGGCTATGGGGACGCCACCAACTGCAGGGATTGTTTTAAGACCATCATCT
CCTACATCGATGAGCAGTTTGAACGGTACCTGCATGACGAGAGTGGCTTGAACAGACGGCACATCATTGATAATAGAGTG
CACTGCTGCTTTTACTTTATCTCGCCCTTTGGACACGGACTTAAGCCTTTAAACGTCGCATTTATGAAAGCAATACACAA
TGAGGTGAACATCGTGCCTGTCATTGCCAAAGCTGACACGCTCACCCTGAAGGAACGGGAGCACTTGAAGAAGAGGATTC
TGGATGAAATTGAAGAACATAATATCAAAATCTATCATTTACCTGATGTAGAATCAGATGAAGATGAGGACTTTGAAGAG
CAGACTAGACTTCTCAAGGCCAGTATCCCATTCTCTGTGGTTGGATCCAATCAGTTGATTGAAGCCAAGGGCCAGAAGGT
CAGAGGCTGCCTCTACCCGTTGGGCGTTGTGGAGGTGGAGAACCCGGAGCACAGTGACTTTCTGAAGCTGCGGACGATGC
TCATCACCCACATGCAGGATCTCCAGGAGGTGACTCAGGACCTTCACTATGAAAACTTCTGCTCTGAGAGGCTCAAGAGA
GGCAGCAGGAAAGTGGAAAACGAGGACATGAATAAAGACCAGATCCTGCTGGAGAAGGAAGCAGAGCTCTGCTGCATGCA
GGAGATGATCGCCAGGATGCAGGCGCAGATGCAGCTGCAAATGCAGGGTGGGGACGGCGACAGCGGGGCCCATGGGCATC
GTGTG

Alignment

ORF - retro_mputfur_436 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.9 %
• Parental protein coverage: 81.72 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  IIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGL
          IIPGA.EKIERTVQIEASTVEIEERGVKLRLTVVD.PGYGDA.NCRDCFKTIISYIDEQFERYLHDESGL
Retrocopy IIPGAVEKIERTVQIEASTVEIEERGVKLRLTVVDAPGYGDATNCRDCFKTIISYIDEQFERYLHDESGL

Parental  NRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEH
          NRRHIIDNRVHCCFYFISPFGHGLKPL.VAFMKAIHN.VNIVPVIAKADTLTLKERE.LKKRILDEIEEH
Retrocopy NRRHIIDNRVHCCFYFISPFGHGLKPLNVAFMKAIHNEVNIVPVIAKADTLTLKEREHLKKRILDEIEEH

Parental  NIKIYHLPDAESDEDEDFKEQTRLLKASIPFSVVGSNQLIEAKGKKVRGRLYPWGVVEVENPEHNDFLKL
          NIKIYHLPD.ESDEDEDF.EQTRLLKASIPFSVVGSNQLIEAKG.KVRG.LYP.GVVEVENPEH.DFLKL
Retrocopy NIKIYHLPDVESDEDEDFEEQTRLLKASIPFSVVGSNQLIEAKGQKVRGCLYPLGVVEVENPEHSDFLKL

Parental  RTMLITHMQDLQEVTQDLHYENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQLQ
          RTMLITHMQDLQEVTQDLHYENF.SERLKRG.RKVENEDMNKDQILLEKEAEL..MQEMIARMQAQMQLQ
Retrocopy RTMLITHMQDLQEVTQDLHYENFCSERLKRGSRKVENEDMNKDQILLEKEAELCCMQEMIARMQAQMQLQ

Parental  MQGGDGDGGAHGHHV
          MQGGDGD.GAHGH.V
Retrocopy MQGGDGDSGAHGHRV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_436 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_436 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 16 parental genes, and 20 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000002608	1 retrocopy	retro_btau_1185,
Canis familiaris	ENSCAFG00000012960	1 retrocopy	retro_cfam_1477,
Choloepus hoffmanni	ENSCHOG00000008715	5 retrocopies