RetrogeneDB ID: retro_mputfur_201

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896898.1:23682971..23683897(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000013526
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: SORD
• Ensembl ID: ENSMPUG00000010850
• Aliases: None
• Description: sorbitol dehydrogenase [Source:HGNC Symbol;Acc:11184]

Sequence

>retro_mputfur_201
ATGGAGGTGGCCAAGCCTGAGAAACTCTCTCTTGTGGTGCACAGACCTGGAGACCTGAGCCTGGACAACTATCCTATCCC
TGAACCAGGCCCAAATGAACTGTTGCTGAAGACACATTCTGTTGGGATCTGTGGCTCAGATGTCCACTACTGGCAGCATG
GTCGAATTGGCCATTTTATTGTGGAAAAGCCAGTGGTGCTGGAGCATGAAGCTTCAGGGACAGTCATAAAAGTGGGATCA
CTGTTCAAGCACCTAAAGCCAGAGGATCGTGTTGCCACAGAGCCTAGCTCTCTGCGAGAAATGGATGAACTTTGTAAGAT
TAGCAGGTATAATCTGTCACCATCCATCTTCTTCTATGCCACGCCCCCTGATGACAGGAACCTCTACTGGTTTTATAAAC
ACAACGCTGACTTCTGCTACAAGCTTCCTGACAATGTCACCTTTGAAGAGGGGGTGCTGATTGAACCACTGTCTGAGGGG
ATCCATGCCTGCCGGCAAGCTGGAATCACCCTGAGGAACAGGGTCTTTGTGTGTGGAGCTGGGCCATGGGACTGTTCATT
CTGATCATGGCCAAGGCAATGGCTGCAGCTCAAGTGCTGGTGACTCATCTGTCTGCTTCTCAGTTGTCTAAAGCTAGGGA
AGTTGGGCCTGATATTGTCCTCCAGATCTCCAAAGACAGCCCTAAGGAAATTGTCAGTAAAGTGAAAGATCTGCTGGGGT
GCAAGCGAAAAGTGACCATCATGTTCCCAGGAGCGGGGCCCACCATCCACTCAAGCATTGATGCTTCTCATTCTGATGGG
ACCCTGGTGCTCGTAGCGCTGGGCTCTGAGATGAGCCCTGTGCCCCCAGTGCACGCTGCCATCCAGGAGATGGATATTAA
GGTTATGTTTCAATATTGCAACACATGGCCAATGGCGATTTTGATG

Alignment

ORF - retro_mputfur_201 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.74 %
• Parental protein coverage: 86.8 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MAAAKAENLSLVVHGPGDLRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQHGRIGDFIVEKPMVLGHE
          M..AK.E.LSLVVH.PGDL.L.NYPIPEPGPNE.LLK.HSVGICGSDVHYWQHGRIG.FIVEKP.VL.HE
Retrocopy MEVAKPEKLSLVVHRPGDLSLDNYPIPEPGPNELLLKTHSVGICGSDVHYWQHGRIGHFIVEKPVVLEHE

Parental  ASGTVVKVGSLVKHLKPGDRVAIEPGALREMDEFCKIGRYNLSPSIFFCATPPDDGNLCRFYKHNADFCY
          ASGTV.KVGSL.KHLKP.DRVA.EP..LREMDE.CKI.RYNLSPSIFF.ATPPDD.NL..FYKHNADFCY
Retrocopy ASGTVIKVGSLFKHLKPEDRVATEPSSLREMDELCKISRYNLSPSIFFYATPPDDRNLYWFYKHNADFCY

Parental  KLPDNVTFEEGALIEPLSVGIHACRRAGITLGNKVFVCGAGP-IGLVTVIVAKAMGAAQVLVTDLSASRL
          KLPDNVTFEEG.LIEPLS.GIHACR.AGITL.N.VFVCGAGP..GL...I.AKAM.AAQVLVT.LSAS.L
Retrocopy KLPDNVTFEEGVLIEPLSEGIHACRQAGITLRNRVFVCGAGP<MGLFILIMAKAMAAAQVLVTHLSASQL

Parental  SKAKEVGADNVLQISKESPKEIASKVESLLGCKPEVTIECTGAEPAIQSGIYATRSGGTLVLVGLGPEMT
          SKA.EVG.D.VLQISK.SPKEI.SKV..LLGCK..VTI...GA.P.I.S.I.A..S.GTLVLV.LG.EM.
Retrocopy SKAREVGPDIVLQISKDSPKEIVSKVKDLLGCKRKVTIMFPGAGPTIHSSIDASHSDGTLVLVALGSEMS

Parental  TVPLVHAAIREVDIKGVFRYCNTWPMAISM
          .VP.VHAAI.E.DIK..F.YCNTWPMAI.M
Retrocopy PVPPVHAAIQEMDIKVMFQYCNTWPMAILM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_201 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_201 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000025496	1 retrocopy	retro_btau_1805,
Ciona intestinalis	ENSCING00000021861	1 retrocopy	retro_cint_5,
Mustela putorius furo	ENSMPUG00000010850	1 retrocopy	retro_mputfur_201 ,
Mus musculus	ENSMUSG00000027227	2 retrocopies	retro_mmus_2795, retro_mmus_505,
Rattus norvegicus	ENSRNOG00000017291	7 retrocopies	retro_rnor_1272, retro_rnor_1813, retro_rnor_2021, retro_rnor_2022, retro_rnor_2023, retro_rnor_2024, retro_rnor_2857,