RetrogeneDB ID: retro_mputfur_1622

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897388.1:217675..218048(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TPGS2
• Ensembl ID: ENSMPUG00000001097
• Aliases: None
• Description: tubulin polyglutamylase complex subunit 2 [Source:HGNC Symbol;Acc:24561]

Sequence

>retro_mputfur_1622
GGAAGGGGGGAGGTTTGCCTTGTCTACAAAAGAGGGAAACCAGTGTTAGCACAGGACACTGAGATCTGTTCCTGGGCAGA
GCATTATCCTGGCATTTTCTCACGGGCGCCTTCACCGCTTACAGTCACCTGCTCATCAGGCAGCTGGGCCTGTTGCAGTG
GCAGTACGCCTTCACCAGCTATGGCATTAGCCCACAGGCCAAGCAGTGGTTCAACATGTATAAACCCATCACCAACAACA
CAGACCTATTTGCAGAAAAGAACAGCTCCTTCATGAACAAGCTGGATCCCAGCAAACTGTTCAAGAGCAAGAACAAGACC
TTAATCCCCAGAAAGGGGCAGTGCAGACTGCAGGTGGTCAGAAAGGGCCTCCT

Alignment

ORF - retro_mputfur_1622 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.12 %
• Parental protein coverage: 51.01 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  GNGKVCLVYKRGKPALAQDTEIW-FLDRALYWHFLTDTFTAYYRLLITHLGLPQWQYAFTSYGISPQAKQ
          G.G.VCLVYKRGKP.LAQDTEI..FL.RAL.WHFLT..FTAY..LLI..LGL.QWQYAFTSYGISPQAKQ
Retrocopy GRGEVCLVYKRGKPVLAQDTEIC<FLGRALSWHFLTGAFTAYSHLLIRQLGLLQWQYAFTSYGISPQAKQ

Parental  WFNMYKPVTYNTDLLAEETNSFVNKLDPSKVFKSKNKT-LIPKKKGPVQPAGGQKGPP
          WFNMYKP.T.NTDL.AE...SF.NKLDPSK.FKSKNKT.L.P.K.G.VQ.AGGQKGPP
Retrocopy WFNMYKPITNNTDLFAEKNSSFMNKLDPSKLFKSKNKT<LNPQK-GAVQTAGGQKGPP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1622 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1622 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 17 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000017766	3 retrocopies	retro_cfam_355, retro_cfam_457, retro_cfam_626,
Choloepus hoffmanni	ENSCHOG00000007960	1 retrocopy	retro_chof_1642,
Erinaceus europaeus	ENSEEUG00000005257	3 retrocopies	retro_eeur_208, retro_eeur_324, retro_eeur_516,
Myotis lucifugus	ENSMLUG00000001739	1 retrocopy	retro_mluc_1194,
Mustela putorius furo	ENSMPUG00000001097	2 retrocopies	retro_mputfur_1622 , retro_mputfur_507,
Mus musculus	ENSMUSG00000024269	1 retrocopy	retro_mmus_2648,
Otolemur garnettii	ENSOGAG00000008218	1 retrocopy	retro_ogar_686,
Rattus norvegicus	ENSRNOG00000014957	1 retrocopy	retro_rnor_2961,
Sus scrofa	ENSSSCG00000026953	1 retrocopy	retro_sscr_590,
Tarsius syrichta	ENSTSYG00000005299	2 retrocopies	retro_tsyr_1161, retro_tsyr_512,
Tursiops truncatus	ENSTTRG00000007153	1 retrocopy	retro_ttru_1112,