RetrogeneDB ID: retro_mputfur_1519

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897202.1:506855..507050(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMPUG00000010425
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: BOLA3
• Ensembl ID: ENSMPUG00000007813
• Aliases: None
• Description: bolA homolog 3 (E. coli) [Source:HGNC Symbol;Acc:24415]

Sequence

>retro_mputfur_1519
AGGTTTTCTGGAGCTACAACTACCAACGCCACTGACATTTCAGGAGGCTGTGGGGCGATGTATGAAATCCAGATCAAGAC
AGAAGAGCTTAAGGAGAAGAAAACTGTCCAGCAGCCCCAGATGGTAAAGCAGGCACTGAAAGAAGAAATCAAAGGGATGC
ACGGATTGTGGATGTTTACCTCCGTCCCCAAACAC

Alignment

ORF - retro_mputfur_1519 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.38 %
• Parental protein coverage: 61.32 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  KFPGATAIKVTDISGGCGAMYEIRIESEEFKEKRIVQQHQMVNQALKEEIKGMHGLRIFTSVPKH
          .F.GAT....TDISGGCGAMYEI.I..EE.KEK..VQQ.QMV.QALKEEIKGMHGL..FTSVPKH
Retrocopy RFSGATTTNATDISGGCGAMYEIQIKTEELKEKKTVQQPQMVKQALKEEIKGMHGLWMFTSVPKH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1519 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1519 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000008739	1 retrocopy	retro_cfam_1574,
Callithrix jacchus	ENSCJAG00000017844	1 retrocopy	retro_cjac_1112,
Dasypus novemcinctus	ENSDNOG00000008309	2 retrocopies	retro_dnov_2474, retro_dnov_510,
Myotis lucifugus	ENSMLUG00000016364	1 retrocopy	retro_mluc_1407,
Mustela putorius furo	ENSMPUG00000007813	1 retrocopy	retro_mputfur_1519 ,
Mus musculus	ENSMUSG00000045160	1 retrocopy	retro_mmus_1648,
Oryctolagus cuniculus	ENSOCUG00000016658	1 retrocopy	retro_ocun_51,
Otolemur garnettii	ENSOGAG00000003502	1 retrocopy	retro_ogar_1839,
Sorex araneus	ENSSARG00000001754	1 retrocopy	retro_sara_83,
Sus scrofa	ENSSSCG00000008291	1 retrocopy	retro_sscr_750,
Tursiops truncatus	ENSTTRG00000006698	3 retrocopies	retro_ttru_1149, retro_ttru_1493, retro_ttru_254,