RetrogeneDB ID: retro_mluc_1407

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429832:4855741..4855985(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: BOLA3
• Ensembl ID: ENSMLUG00000016364
• Aliases: None
• Description: None

Sequence

>retro_mluc_1407
GCCTCACAGGCTGAGAGGGAGCTCAAAGTAACCCAAATTCTCAAAGAACACTTCCCTTGAGCTACCGCTATCAAACTCAC
TGACATTTCAGGAGGCTCTGCGGTGATGTATGAAATCCAGATCGAATCGGAAGAATTCCAGGAGAAGAGGACTGTCCCAG
CAGTACCAGACAGTAAATCAGTCACTAAGAGAAGAAATCAAAGGAATGCATGGATTGCAGAAATTTACTTCTGTTCCCAA
ACAC

Alignment

ORF - retro_mluc_1407 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.05 %
• Parental protein coverage: 74.31 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  ASQTDGELKVTQILKESFPRATTIKVTDISGGCGAMYEIQIESEEFKEKRTV-QQHQMVNQALKEEIKGM
          ASQ...ELKVTQILKE.FP.AT.IK.TDISGG...MYEIQIESEEF.EKRTV.QQ.Q.VNQ.L.EEIKGM
Retrocopy ASQAERELKVTQILKEHFP*ATAIKLTDISGGSAVMYEIQIESEEFQEKRTV>QQYQTVNQSLREEIKGM

Parental  HGLRIFTSVPKH
          HGL..FTSVPKH
Retrocopy HGLQKFTSVPKH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1407 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 11 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000008739	1 retrocopy	retro_cfam_1574,
Callithrix jacchus	ENSCJAG00000017844	1 retrocopy	retro_cjac_1112,
Dasypus novemcinctus	ENSDNOG00000008309	2 retrocopies	retro_dnov_2474, retro_dnov_510,
Myotis lucifugus	ENSMLUG00000016364	1 retrocopy	retro_mluc_1407 ,
Mustela putorius furo	ENSMPUG00000007813	1 retrocopy	retro_mputfur_1519,
Mus musculus	ENSMUSG00000045160	1 retrocopy	retro_mmus_1648,
Oryctolagus cuniculus	ENSOCUG00000016658	1 retrocopy	retro_ocun_51,
Otolemur garnettii	ENSOGAG00000003502	1 retrocopy	retro_ogar_1839,
Sorex araneus	ENSSARG00000001754	1 retrocopy	retro_sara_83,
Sus scrofa	ENSSSCG00000008291	1 retrocopy	retro_sscr_750,
Tursiops truncatus	ENSTTRG00000006698	3 retrocopies	retro_ttru_1149, retro_ttru_1493, retro_ttru_254,