RetrogeneDB ID: retro_mputfur_1406

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897117.1:1349277..1349850(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000002350
• Aliases: None
• Description: None

Sequence

>retro_mputfur_1406
GGGACACAGACCACTGCAGCCTTGTGGCCCTCAAGGAGGGCCCTTCTCACTCCATTTTGCCTTCACTGGACTGGCCATCA
GCTCACCCTGGAGCATGGTACAGAACTCAGGGATGCACAGCCAAGCCAGGTCTCAGGATTCTAGCCTCCAGGAAAAATCT
TGCCATGACTGATAGGGCCCCAGATAAAAATTCAAACCTTCAACCTGTTCTCTTTTACATCCCTGAAAATGAATCACCAT
TGGAACAAAAGTTAAGAGAATTAAGACAAGCACAAAAATGGAACCAACAGTCTAGGCAAACCAGAATTTGACATTTTGTA
AGGAAAAGGAAGAATTTATTAACTTATAACTAAAAGTTAAAGGCCTGGGATGGAGAGCTAGATCAGGTAAAAAAGCAACA
TTACGTACAGAATAAATGGCTGACTTTGGAAGGAACTTTTAGGTAAAAATTTTCAGAAGCACATTATTATAAAAGACTGG
TACAAGTGCAATTTTCCCATCACCTTCTTCATGGGAAAAATGGGCCTGGGGAGGGTTTGGAACAAGCTTAAACCAAAACA
AAAGAAGACTAGC

Alignment

ORF - retro_mputfur_1406 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 60.7 %
• Parental protein coverage: 96.08 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  GTLAMAALRPSRRVLVPPLCRAFAGSGCQLAPERGAERRDTASGRVSGFCPP-RKSCHD-WIGP-PDKHS
          GT...AAL.PSRR.L..P.C....G...QL..E.G.E.RD.....VSGF.PP..KSCHD..IGP.PDK.S
Retrocopy GTQTTAALWPSRRALLTPFCLHWTGH--QLTLEHGTELRDAQPSQVSGF*PP>EKSCHD<LIGP<PDKNS

Parental  NLRPVHFYVPKNESPLEQKLRQLRQETQEWNQQFW-AKQNLTFRKEKEEFIRSRLKARGLDPRAGSGQKA
          NL.PV.FY.P.NESPLEQKLR.LRQ..Q.WNQQ...A.QNLTF.KEKEEFI...LK..GL..RA.SG.KA
Retrocopy NLQPVLFYIPENESPLEQKLRELRQ-AQKWNQQSR<ANQNLTFCKEKEEFINL*LKVKGLGWRARSGKKA

Parental  TLDAEEMADF-YKEFLSKNFLKHMYYNRDWYQRNFAITFCMGRVALERVWNKLRPKPKETA
          TL..E.MADF..KE.L.KNF.KH.....DWY..NF.ITF.MG...L.RVWNKL.PK.K.T.
Retrocopy TLRTE*MADF<WKELLGKNFQKHIII-KDWYKCNFPITFFMGKMGLGRVWNKLKPKQKKTS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1406 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1406 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000030884	2 retrocopies	retro_cfam_1514, retro_cfam_396,
Dasypus novemcinctus	ENSDNOG00000019553	5 retrocopies	retro_dnov_1003, retro_dnov_2304, retro_dnov_2391, retro_dnov_441, retro_dnov_777,
Erinaceus europaeus	ENSEEUG00000011728	1 retrocopy	retro_eeur_107,
Felis catus	ENSFCAG00000027939	3 retrocopies	retro_fcat_482, retro_fcat_549, retro_fcat_649,
Microcebus murinus	ENSMICG00000009792	1 retrocopy	retro_mmur_744,
Mustela putorius furo	ENSMPUG00000002350	2 retrocopies	retro_mputfur_1406 , retro_mputfur_166,
Otolemur garnettii	ENSOGAG00000015416	1 retrocopy	retro_ogar_1394,