RetrogeneDB ID: retro_mmur_744

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_56:558554..558895(+)
• Located in intron of: ENSMICG00000010679

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: APOPT1
• Ensembl ID: ENSMICG00000009792
• Aliases: None
• Description: apoptogenic 1, mitochondrial [Source:HGNC Symbol;Acc:20492]

Sequence

>retro_mmur_744
GTCTCAAGATTCTGCCCTTCAAGAAAATTTTCCCATGATTGGCTAGAAACTCCAGATAAATATTCAGATCTTTGACCTGT
TCACTTTTATATCCCTGAAAAAGAATCACCATTGTAACAAAAGCTTAGAGAATTAAGGCAAGAAACACAAGAATGGAATC
GATAGTTCCGGGCAAACCAGAATTTGATATTTAGTAAGGAAAAAGAAGAATTTATTCACTTAAGACTAAAGCTAAAGGCC
TAGAACTGAGAACTGAGTCAAGGCAGAAAGCAATATTAAATGCCAAAGAAATGGCTGAATTTTACAAGGAATTTTTAACT
AAGAATTTTCAGAAGCACATG

Alignment

ORF - retro_mmur_744 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.52 %
• Parental protein coverage: 59.07 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  VSRFCPPRKSCYDWIGPPDKYSNLRPVHFYIPENESPLERKLRKLRQETQEWNQQFWANQNLTFSKEKEE
          VSRFCP.RK...DW...PDKYS.L.PVHFYIPE.ESPL..KLR.LRQETQEWN..F.ANQNL.FSKEKEE
Retrocopy VSRFCPSRKFSHDWLETPDKYSDL*PVHFYIPEKESPL*QKLRELRQETQEWNR*FRANQNLIFSKEKEE

Parental  FIHSRL-KAEGLGLRTESGQKATLNAEEMAGFYKEFLSKNFRKHM
          FIH.RL.KA.GL.LRTES.QKA.LNA.EMA.FYKEFL.KNF.KHM
Retrocopy FIHLRL<KAKGLELRTESRQKAILNAKEMAEFYKEFLTKNFQKHM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_744 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_744 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000030884	2 retrocopies	retro_cfam_1514, retro_cfam_396,
Dasypus novemcinctus	ENSDNOG00000019553	5 retrocopies	retro_dnov_1003, retro_dnov_2304, retro_dnov_2391, retro_dnov_441, retro_dnov_777,
Erinaceus europaeus	ENSEEUG00000011728	1 retrocopy	retro_eeur_107,
Felis catus	ENSFCAG00000027939	3 retrocopies	retro_fcat_482, retro_fcat_549, retro_fcat_649,
Microcebus murinus	ENSMICG00000009792	1 retrocopy	retro_mmur_744 ,
Mustela putorius furo	ENSMPUG00000002350	2 retrocopies	retro_mputfur_1406, retro_mputfur_166,
Otolemur garnettii	ENSOGAG00000015416	1 retrocopy	retro_ogar_1394,