RetrogeneDB ID: retro_mputfur_1270

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897064.1:1047005..1048472(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CKAP2
• Ensembl ID: ENSMPUG00000017996
• Aliases: None
• Description: cytoskeleton associated protein 2 [Source:HGNC Symbol;Acc:1990]

Sequence

>retro_mputfur_1270
CCAGCCGTGCCTCAGGAGCTACACTACCCCCAACTAGAGGGCTCAGCCTGCATTCAGAGAACAAAGGAGACAAAAACTCA
GGGAACATATATTAAAAAGAAAAGCTTTTTTTGCATACAGACAGGAAGATTACATACCCAGTAGTAGAGACCATGAAGTG
ATGAACTCTGAGGGCCAGGTCTGCAAAGAGACAAAAGTTCTGAAATTTAAAACAAAAATGGCTGGTAAAGAAAATGTCAG
TAGACCTCCTGGGAACAAAAATCATATAACAATGAGAAAAAATTGTATTCCTTTAAGACCTTCTAATGAATCAACCAATT
CAACCATAGTGATTGACACTACATAATTTTGAGGATAATAATCAAATGGGACAATCCATACCAATTAAAGATGACCCTCA
ACATCAACACATGAATTAAGCCAAGTGTTTCATTTTAAAAGCAACAATAAAAAGGAACAAATACCCAAAGAAAAACCAAA
GATGCTAACATGCCCAAGGAGTTTGTGCTTGGGTCTTACCCTGGCCAAATTGTTCAGTCTAAGATTAATTCATTTAGAAA
GCCCCTGCTAGTAAGAGATGAGAGTTCGGCAACAACGAAGAAACCTTCAGCTGCTGTCCCTAAAGCCCCAGAGCCTCCAC
CCACAGACACCCACAGTGTGACCATGAAAAGTGATAGAGCCACAAACGCGGTGACCATTGCTAAACTTGGGAGCACGGCA
TCTCAGGATAGACAGCTGGTGTGGCCTCCCATCAGAAGTCACAGTGACAGTGCTCAGGGTGCTGTGAAACAGGGCCTTGG
GAGAACCACCGCCAACATTATAATCTGGGAAGGGCTCGGGAGGATGAATTACTGCAATCAAACACGGTTTCATCTAGTGC
CAAAACCGGTTCTCAGGATGTAGAGAGAAGGAAGACACTGTCAATAAGCCTGACCTCTGAAACTCTAGGCAAGCCTGCTG
CATCTTCTAAGACCAAACTGATACTGAAATCAAAAAGCACTGACCCTTGTAGACACATATAGCAAAAGCAACTCTTGATA
GATAGGCTCAGGCCAGAGAAACAGCAGAAGAGAGAAAAGCTCGTCTGAGTGAGTGGAAAGCTGGCAAAAGAAAAGTGCTG
AAAATGCCTCCTAGCTCAGTGATTACCCAGCCTGAGCCTGAAGGGCAGAATGAAAACTCAGCTGGGTCCTTTTGGACAAT
CATGGCAGAAGATGAGCAAAGATTATTTACTGAAAAAGTAAACAAGACATTTTTGGAATGCCTAAACCTGATTAATGAGA
GATGCCAGAAGAAGAAATGTTGGTCATACTGAATGACCTCATTAAAAATATTCCAGATGCCAAAAAACTTGTTAAATATT
GGCTATGCTTTGCACATATTGAACCACTCACAAGTCCTATCGAAAATATTATCACAATGTCTGAGAAAGCTGTTCTGGCA
GGGGCTCAGACTATTGAAGAAATGCAA

Alignment

ORF - retro_mputfur_1270 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.45 %
• Parental protein coverage: 72.46 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 8

Retrocopy - Parental Gene Alignment:

Parental  PAVPQDLQ-LPPSQ-RAQPAFREQRRQKLKEHILKRKTFFAYKQENHIPS-RDQKVMNSEGQVHEETKVL
          PAVPQ.L..LPP...RAQPAFREQRRQKL.EHILKRK.FFAY.QE..IPS.RD..VMNSEGQV..ETKVL
Retrocopy PAVPQELH<LPPTR<RAQPAFREQRRQKLREHILKRKAFFAYRQEDYIPSSRDHEVMNSEGQVCKETKVL

Parental  KFETKMAGKENVSRPPGNKNHTTTGKNCSPLRPSNKSTNSTIATDT-HNFEDNNQMRQSVPIKDDPQSQH
          KF.TKMAGKENVSRPPGNKNH.T..KNC.PLRPSN.STNSTI..DT.HNFEDNNQM.QS.PIKDDPQ.QH
Retrocopy KFKTKMAGKENVSRPPGNKNHITMRKNCIPLRPSNESTNSTIVIDT>HNFEDNNQMGQSIPIKDDPQHQH

Parental  MT-LSQVFHLKNNNKKKQ-VSTEKPKQDANTSKKLVLGSYRGQIVQSKINSFRKPLPVRDESSATTKKPS
          M..LSQVFH.K.NN.KK....T.....DAN..K..VLGSY.GQIVQSKINSFRKPL.VRDESSATTKKPS
Retrocopy MN<LSQVFHFKSNN-KKE<TNTQRKTKDANMPKEFVLGSYPGQIVQSKINSFRKPLLVRDESSATTKKPS

Parental  AAVPKAPEPLPADTQGATVRSDRALNTVTTTKFGSTASQDRQLGRPPIRSHRDSAQDAVKQGLGRTTANV
          AAVPKAPEP.P.DT...T..SDRA.N.VT..K.GSTASQDRQL..PPIRSH.DSAQ.AVKQGLGRTTAN.
Retrocopy AAVPKAPEPPPTDTHSVTMKSDRATNAVTIAKLGSTASQDRQLVWPPIRSHSDSAQGAVKQGLGRTTANI

Parental  TIRKG-PREKELLHSNTVSSSAKTGAQDVERRKTLARSLTSETVARPALSSNTKLVQKSKSIDPRRHT-I
          .I..G..RE.ELL.SNTVSSSAKTG.QDVERRKTL..SLTSET...PA.SS.TKL..KSKS.DP.RH..I
Retrocopy IIWEG<AREDELLQSNTVSSSAKTGSQDVERRKTLSISLTSETLGKPAASSKTKLILKSKSTDPCRHI<I

Parental  AKATLDRSARPKETAEERKARLSEWRAGKRKVLKRPPSAVVTQPEPGGQNENSVGSFWTTMVEEDEQRLF
          AKATLDR.A...ETAEERKARLSEW.AGKRKVLK.PPS.V.TQPEP.GQNENS.GSFWT.M..EDEQRLF
Retrocopy AKATLDR*AQARETAEERKARLSEWKAGKRKVLKMPPSSVITQPEPEGQNENSAGSFWTIMA-EDEQRLF

Parental  TEKVNKTFSECLNLINEGC-PKEEILVILNDLIKNIPDAKKLVKYWICLVRIEPLTSPIENIITIYEKAI
          TEKVNKTF.ECLNLINE.C.P.EE.LVILNDLIKNIPDAKKLVKYW.C...IEPLTSPIENIIT..EKA.
Retrocopy TEKVNKTFLECLNLINERC<PEEEMLVILNDLIKNIPDAKKLVKYWLCFAHIEPLTSPIENIITMSEKAV

Parental  LAGAQPIEEMR
          LAGAQ.IEEM.
Retrocopy LAGAQTIEEMQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1270 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1270 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 12 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000005898	1 retrocopy	retro_cfam_968,
Choloepus hoffmanni	ENSCHOG00000009905	2 retrocopies	retro_chof_1493, retro_chof_973,
Cavia porcellus	ENSCPOG00000012382	1 retrocopy	retro_cpor_171,
Felis catus	ENSFCAG00000010021	1 retrocopy	retro_fcat_1770,
Myotis lucifugus	ENSMLUG00000000132	1 retrocopy	retro_mluc_1515,
Monodelphis domestica	ENSMODG00000010436	1 retrocopy	retro_mdom_1364,
Mustela putorius furo	ENSMPUG00000009729	1 retrocopy	retro_mputfur_1172,
Mustela putorius furo	ENSMPUG00000017996	1 retrocopy	retro_mputfur_1270 ,
Mus musculus	ENSMUSG00000037725	1 retrocopy	retro_mmus_2651,
Otolemur garnettii	ENSOGAG00000008428	1 retrocopy	retro_ogar_1743,
Tupaia belangeri	ENSTBEG00000005807	1 retrocopy	retro_tbel_176,
Tursiops truncatus	ENSTTRG00000009624	2 retrocopies	retro_ttru_1491, retro_ttru_1741,