Parental gene:

Ckap2, ENSMUSG00000037725

Aliases:Ckap2, AI461656, AW228814, LB1
Description:cytoskeleton associated protein 2 [Source:MGI Symbol;Acc:MGI:1931797]
Organism:Mouse (Mus musculus)
Coordinates:8:22168151..22185819(-)


>ENSMUSG00000037725
ATGGCAGAGTCCAGGAAACGCTTCCTTGGCAGGGCTGCGAGGAATCCCTTGCCGGTGACCCGGGACCTGCAGCTGCCCCC
GACCAGGCGAGACCAGCCGGCCTTCCGAGAACAAAGAAAACAAAAACTCAAGGAATATCTGTTAATACGAAAAACAGTGT
TTCCATACAAACAAGAAAATCAGATATCCAGAGATCAGAAAATGATAACATCTGAGGATCGGGTCCAAGAAGGGAAAAAA
GTTGTGAAACTCAAAACAGAAGTGGCTGATAAAGAAAATATTGAAAGTACAGTTGAGAAAAACTGCATTCCATTAAAAGC
TGGAGAAGTAACCAGCTCAGAAATACATAATTCAAAGGATAATGTTCAAGCTGTGCAGTTATTATCTACAAGAGATGATT
TGCCAGGTCAGACTGTGACATTAGACCCGGCATGTCACCATAAAGACAATAAAAAGATGCAAATGACTGCAGAGAAGCCC
AAACAAGACAGTAATGTGTCTAAAAAGCGAGTGCTTGGCTATTATCATGGCCAGATTGTTCAGTCTAAGATTAATTCATT
TAGAAAGCTTCCCAGTGTCAAAGGCGAGAGTCTTACAACAACCAAGAAACTTCCCACTACTGTGTCTAAAGCCATGAAGG
CTCAGAGTGAGCCTGCGAACACCGTCAGCGTAAAAGCCTCAACTACAGCTGCTGCCACCAAGTTTGCAGACGCTAAACCT
GTGAGCACTGCGTCGAAGGACACACTTGTGCGACCACCTATCCGAAGCCTCCACAGTAGTTCCCACGGAGCTGCGAAACA
GGGCCTCAGCAGGCCGCTTGCCAATGTTACAGTCAGAAAAGGGATGCTTGACAAGGAGTCACATCGATCAGAACCAGTTG
TGTCCGTTGTCAAAGCCGGTTCTTCTCAGGCCCCATCAAGAAGCATAGCATCTAAAGATGCAGCCAGGACTGATTCGTCT
AATACCAGACTGATGGTAAAGCCAAAAGATACTGACCAGCGCAGATACACGATTGCAGGAGCAAGTGTTCATAGATCAGC
TCAGCTCAAGGACACCACCGCAGAGAGGAAAGCTCAGATGACGGAGTGGAGAACTGGCAAAGGAAAGGGGCTAAAACGAC
CTCCTCATTCAGTAGTCACCCAGGCTGAGCCAAAGGGACAAAGTGAAAACCCAGTTGGGTCCTTTTGGACTACCATGGCA
GAAGAAGATGAGCAGAGATTATTTACTGAAAAAGTAAACAAAACTATTTCTGAATGCCTGAACCTTATTAATGAGGGATG
CCCAAAAGAAGAAATTTTGGCTACATTGAATGACCTGATTCATAATATTCCAGATGCCAAAAAACTTGTTAAATATTGGA
TATGTCTTGTACGTATTGAACCAATCACAAGTCCTATTGAAAATATTATCTCAATCTATGAGAAGGCCATCCTGGCAGGG
GCTCAGCCTATTGAAGAGATGCGTCATATAATCATAGATATTCTAACAACGAAGAGTCAAGAAAAAGTCAATTTGGGAGA
AAATATTGAGGAGGCTCATGCAACCAAGGAACCTATCCAAGAAGTAAATGCTGATGCTAATGTAGGGTCAGGAAAACCAG
GAGAGGAGAATGAACATCATGGCAAAGTTGAGGTGTATGAAGATGATCAAGACAACAAAATAAAAGATCCGGATTTAACA
ACTCCGGACTCAAAAACTGAAGCAGGTTGCATAATTCGATATAATGTATCTTCTACACCTCGGCTGCAAAGTATGAAAAA
GATGCAACATGATAAAAATTCCACACTTAAAGAGCTAAAGTTCCTGACACCAGTGAGACGCTCACGGCGCATTCAAGACA
AGACTTCACGACTGCCAGCCATGTTAAAAGACCACGACCCTTCTGTGTCTTCCCTGGAGCAGTTGTCTGAGTTGGGAGGG
GATGCCTTTGTCTGCCGCCCTAATGCAGCACTGTGCCCTCTGTTCTTTGAGACCGACGTAGCGGAAGAGGAATAG

Library Parental gene expression (RPM)
SRP007412_brain 0 .26 RPM
SRP007412_cerebellum 0 .30 RPM
SRP007412_heart 0 .37 RPM
SRP007412_kidney 0 .77 RPM
SRP007412_liver 0 .05 RPM
SRP007412_testis 12 .44 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000005898 ortholog_one2one 1 retrogene
retro_cfam_968,
Choloepus hoffmanni ENSCHOG00000009905 ortholog_one2one 2 retrogenes
retro_chof_1493, retro_chof_973,
Cavia porcellus ENSCPOG00000012382 ortholog_one2many 1 retrogene
retro_cpor_171,
Felis catus ENSFCAG00000010021 ortholog_one2many 1 retrogene
retro_fcat_1770,
Myotis lucifugus ENSMLUG00000000132 ortholog_one2many 1 retrogene
retro_mluc_1515,
Monodelphis domestica ENSMODG00000010436 ortholog_one2many 1 retrogene
retro_mdom_1364,
Mustela putorius furo ENSMPUG00000017996 ortholog_one2one 1 retrogene
retro_mputfur_1270,
Otolemur garnettii ENSOGAG00000008428 ortholog_one2one 1 retrogene
retro_ogar_1743,
Tupaia belangeri ENSTBEG00000005807 ortholog_one2one 1 retrogene
retro_tbel_176,
Tursiops truncatus ENSTTRG00000009624 ortholog_one2one 2 retrogenes
retro_ttru_1491, retro_ttru_1741,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_2651 84.16 50.60
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Download FASTA sequences of all ENSMUSG00000037725 retrocopies