RetrogeneDB ID: retro_mputfur_1090

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897012.1:1031967..1032382(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PIGX
• Ensembl ID: ENSMPUG00000003841
• Aliases: None
• Description: phosphatidylinositol glycan anchor biosynthesis, class X [Source:HGNC Symbol;Acc:26046]

Sequence

>retro_mputfur_1090
CTGGCTGCCAGGGCTGTGGGCATCCAGATGGTGGCCTCACAGGTCCTCTGGGATGTGGCTGGGCTCACCAACACACCAGT
TACAGTCTTCACTGCTGCCCCCACTGATCCTGGCACAAGGGCTACTTGCTCTGAAATTATGCTGAGGCAAGGAGTTTTAA
AAGATGGTTCCCACAGAGAACTTTTAATAAAAGTGAAATTTGGAGAAGATACTGAGCACTTAAATAGACCTGCTGACTTA
ATTAAACAGTACATCCTGACAGGACATTTCATGAATCCATATGAGTTGGCTTCATTTCAAGAGAGAAATGTAACAGAGCA
GGGATGGTTTCAGAAAACTTTAATATAGAAGCTCCCAATTATTTGTCCAAGGATTCTAAGGTTCAGTTTGTGCCAAATAA
GATTCACAGTGCGTT

Alignment

ORF - retro_mputfur_1090 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 66.67 %
• Parental protein coverage: 53.7 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LAVTAVVVQAVAWLHLWEAAGLT-TPATAFTATPTDAGIRATCSEIILRQEVLKDGFHRDLLIKVKFGES
          LA..AV..Q.VA...LW..AGLT.TP.T.FTA.PTD.G.RATCSEI.LRQ.VLKDG.HR.LLIKVKFGE.
Retrocopy LAARAVGIQMVASQVLWDVAGLTNTPVTVFTAAPTDPGTRATCSEIMLRQGVLKDGSHRELLIKVKFGED

Parental  IEDLQTCRLLIKQYIPTGLFVDPYELASLRERNITE-AVMVSEDFNIEAPNYLSKESEV-LIYARQDSQC
          .E.L.....LIKQYI.TG.F..PYELAS..ERN.TE.A.MVSE.FNIEAPNYLSK.S.V....A..DSQC
Retrocopy TEHLNRPADLIKQYILTGHFMNPYELASFQERNVTE<AGMVSENFNIEAPNYLSKDSKV<SVCAK*DSQC

Parental  I
          .
Retrocopy V

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1090 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1090 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000003759	1 retrocopy	retro_amel_386,
Callithrix jacchus	ENSCJAG00000013676	1 retrocopy	retro_cjac_2794,
Monodelphis domestica	ENSMODG00000018455	1 retrocopy	retro_mdom_1758,
Mustela putorius furo	ENSMPUG00000003841	1 retrocopy	retro_mputfur_1090 ,
Mus musculus	ENSMUSG00000023791	1 retrocopy	retro_mmus_943,
Oryctolagus cuniculus	ENSOCUG00000012329	1 retrocopy	retro_ocun_977,
Rattus norvegicus	ENSRNOG00000033623	2 retrocopies	retro_rnor_1998, retro_rnor_2555,